Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq129 102 2e-16 seq3 102 2e-16 seq3218 87.8 3e-12 seq1532 87.8 3e-12 seq5 87.8 3e-12 seq2991 86.0 1e-11 seq7 86.0 1e-11 >seq2 Length=39772498 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || |||||||| | |||| || || || || ||||| |||||||| || Sbjct 4313304 TTAGTTACCACCACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTA 4313245 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || ||||| || ||||| || | || || ||||| || || ||||| ||||| || Sbjct 4313244 GTCTGAAAGTGTTCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATC 4313185 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || || ||||||||||| || || || || || || |||||| || || | | Sbjct 4313184 TGGAGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGC 4313125 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||||||| || ||||| || || ||||| ||||||||||| || |||||| Sbjct 4313124 TTCTACTTCCAGTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 89.7 bits (98), Expect = 9e-13 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || ||||| ||||| || || || || ||||||||||| || || || || || || | Sbjct 4312254 ATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTC 4312195 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 ||||| || || | | |||||| |||| || ||||| || || ||||| || ||||| Sbjct 4312194 TCGATTGTATCAGACGCTTCTACCTCCAGTGTAATGGTCTTACCAGTGAGAGTYTTGACR 4312135 Query 68451 AATATCTGCATT 68462 || || |||||| Sbjct 4312134 AAGATTTGCATT 4312123 >seq129 Length=450478 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| ||||||||||| || |||||| || ||||| ||||| || Sbjct 101386 CCACCGCGCAGGCGCAGTACCAAGTGTAAGGTACTCTCTTTCTGTATGTTGTAATCAGAC 101445 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| ||||| ||||| || | ||||||||| || ||| Sbjct 101446 AAGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAATATTAGCCGTTGTTGGTCAGGGGGA 101505 Query 68355 ATGCCT 68360 || ||| Sbjct 101506 ATCCCT 101511 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||||||||| ||||| || |||||||||||| | || || || || Sbjct 105189 CCTTCTTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGCCTCCACCTCG 105248 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 105249 AGGGTGATGGTCTTGCCTGTCAGCGTCTTCACGAAGATCTGCAT 105292 >seq3 Length=34716904 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 ||||| || | ||||||||| |||| || | ||| ||||| |||||||| | || Sbjct 17809144 GTGATCTTCCTGGTCACGAAACTCTCCCCTCTCCTAGGACTCTCATGGTTGAACAAAATC 17809203 Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 |||||||||||||||||| ||| || |||||||||||||| || ||||||| || || Sbjct 17809204 CCGTTGCACGCGAACATGTTATAAGCTTCACGGTAGTTCACCACGATCCAGTAGCCATAC 17809263 Query 268487 ATCTTTGCA 268495 | ||| ||| Sbjct 17809264 AACTTAGCA 17809272 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 6747374 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 6747433 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 6747434 CCCCACGTTGGGC 6747446 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 268514 GGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAG 268573 |||| ||| || || || ||| ||||| | |||| | ||||| || | ||||| || Sbjct 17810299 GGATAGAACGGAGTGGTTTCCTTCTGAGGAACTTCTTGAACTTTCCCGTACAGCTCCGAC 17810358 Query 268574 GTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGC 268633 ||||| |||||||||||||| ||| || || || || | | ||| || |||||| Sbjct 17810359 GTCGAGGCTTGGTAGAACTTGACCTGTTTATCCAGCCCTGAGGTCCTGATGGCATCGAGC 17810418 Query 268634 AAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACC 268693 | | || ||||| | | ||||| || || || ||||| || |||||||||||| Sbjct 17810419 AGCCTCAGTGTTCCAACAGCGTCCACTTCGGCAGTGTACTCACTCAGATCGAATGACACC 17810478 Query 268694 T 268694 | Sbjct 17810479 T 17810479 >seq3218 Length=36788 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 36587 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 36528 Query 84516 CCCACATCGGGCAGGTCG 84533 ||||| | |||| |||| Sbjct 36527 CCCACGTTGGGCGTGTCG 36510 >seq1532 Length=80857 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 49840 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 49899 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 49900 CCCCACGTTGGGC 49912 >seq5 Length=36881487 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 25205263 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 25205204 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 25205203 CCCCACGTTGGGC 25205191 >seq2991 Length=42102 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 715 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 656 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 655 CCCACGTTGGGC 644 >seq7 Length=109384913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 6331716 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 6331775 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 6331776 CCCACGTTGGGC 6331787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921475677713920