Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3237 104 2e-17 seq12 104 2e-17 seq532 86.0 5e-12 >seq3237 Length=36711 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || | ||||||||| Sbjct 12751 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGGTCTAAGGAA 12692 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 12691 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 12652 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || | ||||||||| Sbjct 12751 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGGTCTAAGGAA 12692 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 12691 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 12652 >seq12 Length=46368093 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || | ||||||||| Sbjct 24066765 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGGTCTAAGGAA 24066706 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 24066705 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 24066666 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || | ||||||||| Sbjct 24066765 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGGTCTAAGGAA 24066706 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 24066705 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 24066666 >seq532 Length=192510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 ||||| || |||||||||||||||| | ||| ||||||| ||| ||| | ||||||||| Sbjct 98143 CATGTTTTAGCTCTAGAATTACCACAGCTATTCAAGTAAATGAKGGTACGGTCTAAGGAA 98084 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || | | || |||||||| || ||||| Sbjct 98083 CCATAACTGATTTAATTAACCTTTCGTGGTTTCACCTTAA 98044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 ||||| || |||||||||||||||| | ||| ||||||| ||| ||| | ||||||||| Sbjct 98143 CATGTTTTAGCTCTAGAATTACCACAGCTATTCAAGTAAATGAKGGTACGGTCTAAGGAA 98084 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || | | || |||||||| || ||||| Sbjct 98083 CCATAACTGATTTAATTAACCTTTCGTGGTTTCACCTTAA 98044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397000767974272