Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 >seq2 Length=39772498 Score = 149 bits (164), Expect = 1e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || |||||| ||||| || ||||| | Sbjct 4313297 CCACCACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAA 4313238 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | |||||| || || || || || | ||||||| ||||| Sbjct 4313237 AGTGTTCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGA---TCTGGA 4313181 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || ||||||||||| ||||| || || || || | ||| || |||| Sbjct 4313180 GGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCT 4313121 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || ||||| ||||| |||||||||||||| || |||||| Sbjct 4313120 ACTTCCAGTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||||||||| ||||| || || || || | ||| || |||| Sbjct 4312233 GGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCT 4312174 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || ||||| ||||| || || |||||| Sbjct 4312173 ACCTCCAGTGTAATGGTCTTACCAGTGAGAGTYTTGACRAAGATTTGCATT 4312123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179461903995008