Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 seq2935 107 2e-18 seq6 105 7e-18 seq3 102 9e-17 seq1453 100 3e-16 seq5 100 3e-16 seq2742 95.1 1e-14 seq10 95.1 1e-14 seq1688 91.5 2e-13 >seq2 Length=39772498 Score = 125 bits (138), Expect = 8e-24 Identities = 162/218 (74%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 42010 ATGTGCTCTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA 42068 |||| ||| ||||| ||||| ||||| || | || || ||| |||| || |||||||| Sbjct 4310976 ATGT-CTCACCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTG 4310918 Query 42069 CCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG- 42127 |||||||| ||||||||||||||||| | || | | ||||||||| ||| | || | Sbjct 4310917 CCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCY-TGAATCTTGGC 4310859 Query 42128 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 || | || | | |||||| || ||||| |||| |||||||| ||||| || || Sbjct 4310858 CTTCACATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAG 4310799 Query 42188 CGTCTTTACAAAGATTTGCATTTTCACGCCGAATACAA 42225 ||||| || ||||| ||||| ||||| || ||||| Sbjct 4310798 GGTCTTCACGAAGATCTGCATCCTCACG-AGACTACAA 4310762 Score = 122 bits (134), Expect = 9e-23 Identities = 154/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| || | || || ||| |||| || |||||||| |||||||| | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 |||||||||||||||| | || | | |||||||||| ||| | || | || | || Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTC 2636861 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || ||||| |||| |||||||| ||||| || || ||||| || Sbjct 2636862 TCGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 2636921 Query 42198 AAGATTTGCATTTTCACGCCGAATACAA 42225 ||||| ||||| ||||| || ||||| Sbjct 2636922 AAGATCTGCATCCTCACG-AGACTACAA 2636948 >seq2935 Length=43313 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 42195 AAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 42138 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT 57088 | ||||||||||||||||||| |||| |||| Sbjct 42137 TTACCACTATACTACCGAGGAATGAAAATAT 42107 >seq6 Length=23341858 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 12061048 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 12060989 Query 57066 ATACTACCGAGGATTGAATAT 57086 |||||||||||||||||| || Sbjct 12060988 ATACTACCGAGGATTGAAGAT 12060968 >seq3 Length=34716904 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 20410796 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 20410737 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||||||||||||| Sbjct 20410736 TTACCACTATACTACCGAGGATTG 20410713 >seq1453 Length=94963 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29402 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29461 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 29462 TACTACCGAGGAATG 29476 >seq5 Length=36881487 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10423054 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 10423113 Query 57066 ATACTACCGAGGATTGAA 57083 ||||||||||||| |||| Sbjct 10423114 ATACTACCGAGGAATGAA 10423131 >seq2742 Length=45117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 44837 CTCCCCGGAGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 44896 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 44897 TACTACCGAGGA 44908 >seq10 Length=51758932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 42468738 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 42468797 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 42468798 TACTACCGAGGA 42468809 >seq1688 Length=77306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 15299 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 15240 Query 57065 TATACTACCGAGGA-TTGAATA 57085 ||||||||||| || ||| ||| Sbjct 15239 TATACTACCGAAGACTTGTATA 15218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 27765 AAAAAGTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 27706 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||| || Sbjct 27705 TACCACTATACTACCGAAGA 27686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543126320522240