Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 seq4 98.7 1e-15 seq281 91.5 1e-13 seq129 86.0 6e-12 >seq2 Length=39772498 Score = 129 bits (142), Expect = 6e-25 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| ||||||||||| || | || ||||||| ||||||| ||||||||||| || | | Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||||||||| || || ||||| || || || || || || ||| ||| || Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || ||||| || | || | ||||||||| |||| || || |||| Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 4310787 AGATCTGCAT 4310778 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | || ||||||| ||||||| ||||||||||| || | ||| Sbjct 2636745 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 2636804 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || ||||| || || || || || || ||| ||| ||| Sbjct 2636805 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCG 2636864 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || ||||| || | || | ||||||||| |||| || || ||||| Sbjct 2636865 ATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 2636924 Query 64436 ATTTGCAT 64443 || ||||| Sbjct 2636925 ATCTGCAT 2636932 >seq4 Length=10813142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 322/498 (65%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 154010 CAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCT 154069 || ||| ||||| | ||||| || || || | | ||| | || || | ||| | Sbjct 9996324 CAGGTGATGGTTCACGACTTGGAACTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGT 9996265 Query 154070 GGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCAT 154129 |||| | ||||| || ||||| ||||| || | ||| || || |||| ||||| ||||| Sbjct 9996264 GGTGTATGGCTCAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCAT 9996205 Query 154130 ATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGC 154189 | || | | | |||||||| || ||| ||| ||||| ||||| | | || Sbjct 9996204 AGGTGCAAGAAGAAGAGAGTTTCTCACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGC 9996145 Query 154190 CCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACT 154249 ||||| |||||| ||||| ||| |||||||||||| || | || |||| ||| Sbjct 9996144 CCAATCCCACAAAGMAGTAGGAGTCACACCCCACATGTCGTACTGAAGAATACCCTTACT 9996085 Query 154250 CGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTT---TGCCAAGTCGCAACT 154306 | |||| | ||| | ||| ||||| |||||| ||| | || ||||| Sbjct 9996084 AACTGGACATCCTTCATACGTCTCGTATGGCCC---CAGTTTCTCTGCAAGCTCACAACT 9996028 Query 154307 GGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTG---GC 154363 || || || ||| | ||||| | |||||| |||||| || || |||| | Sbjct 9996027 AGCCTCCAATGCCCCGTAGTAAATGGTTTCAAAAATTTGAGCATT---CAATTTGCGTGA 9995971 Query 154364 TTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCC 154423 ||||| ||| | || | | || || || |||||||| || ||||| || || Sbjct 9995970 ACCCTCACTGTCGAAAGGAAGCCGCATTAGGATGAAGGCATCGGCCAGACCTTGGATTCC 9995911 Query 154424 CACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATT 154483 | |||| ||||| ||| | | || || |||||| | | | ||||| ||||| Sbjct 9995910 GATGCCAATGGGTCGGTGCCTCATGTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATT 9995851 Query 154484 GATATCGATAATTTTATT 154501 | ||| || || || || Sbjct 9995850 GGCATCTATGATCTTGTT 9995833 >seq281 Length=276453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 | || ||||||||||| || | || |||||| ||||||| ||||||||||| || | | Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||| ||||||||||| || || ||||| || || || || || || Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTT 164629 >seq129 Length=450478 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || ||||||||||| | | |||||| | ||||||||||||||||||||| | Sbjct 101422 TCTTTCTGTATGTTGTAATCAGACAAGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAT 101481 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||| || ||||| || ||||| ||| Sbjct 101482 ATTAGCCGTTGTTGGTCAGGGGGAATCCCT 101511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499565256547840