Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 >seq4 Length=10813142 Score = 134 bits (148), Expect = 1e-26 Identities = 584/913 (64%), Gaps = 35/913 (4%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAA 94538 ||||| || || || || |||||||| | | ||||| | ||| ||| |||||||| Sbjct 9995590 CAGGTAGAAACAGGGACACCCTACATGCTTTATAAGGATGCATGT-AACAGGAAGTCCAA 9995648 Query 94539 CCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 ||||||| | || || ||||||| | ||||| ||||| |||||||| || |||| Sbjct 9995649 CCAGCAGAATCTTGGAACGATCAAGTGTAGCAATCTATGCACAGAGATTGTGGAATATAG 9995708 Query 94599 TTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCG 94658 || || || |||||||||||||||||| ||| ||| || | ||| || | || Sbjct 9995709 CTCACCTGATGAGATTGCTGTGTGTAACTTGGCCTCGATTGCC--GTCAACATGTTTGTT 9995766 Query 94659 AGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG 94718 | || ||| ||| | |||| | | |||| |||| | | | Sbjct 9995767 A-ATTTGGACAACTCT---------TACGATTTTGTCAAGCTAAAGAACGTATCCAAACT 9995816 Query 94719 GATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 || ||| ||||||| | | || || || | ||| || || | || || | Sbjct 9995817 AGTGACGAGGAATCTGAACAAGATCATAGATGCCAATTACTATCCAGTTGCTGAAGCCAA 9995876 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 ||| ||| ||| ||| || ||||| |||||||| |||| ||| | || || || | Sbjct 9995877 ACTCTCCAACATGAGGCACCGACCCATTGGCATCGGAATCCAAGGTCTGGCCGATGCCTT 9995936 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCG----ACGCGGCGGGTTTGAATTTGAACA 94894 | | ||||| || || | |||| || | |||| |||||| | | Sbjct 9995937 CATCCTAATGCGGCTTCCTTTCGACAGTGAGGGTTCACGCAAA----TTGAATGCTCAAA 9995992 Query 94895 TATTCGAAAGCATTTATTACGGGGCCATGAAA-CAATCCGTCCACTTGGCCAGATCGGAC 94953 | || |||| |||||| |||||||| || | | | || |||| ||| || Sbjct 9995993 TTTTTGAAACCATTTACTACGGGGCATTGGAGGCTAGTTGTGAGCTTGCAGAGAA---AC 9996049 Query 94954 GGCGGGCCACACGAATCGTTCCGCGGATCGCCC-TTGGAACAGGGCATTTTTCAGTTCGA 95012 | |||||| |||| ||| |||| || || | | |||| ||| |||||| ||| Sbjct 9996050 TG-GGGCCATACGAGACGTATGAAGGATGTCCAGTTAGTA-AGGGTATTCTTCAGTACGA 9996107 Query 95013 CCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 | | |||||||||| || | | ||| || |||| |||||| | || Sbjct 9996108 CATGTGGGGTGTGACTCCTACTKCTTTGTGGGATTGGGCGGCTCTAAAACAAAAAATTGC 9996167 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| ||||||| |||| | || ||| | || || ||||| || || || || || || Sbjct 9996168 TGCACATGGTGTGAGAAACTCTCTTCTTCTTGCACCTATGCCTACAGCTTCTACTGCACA 9996227 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || || ||||| || || || || || | |||| | || | |||| | |||| Sbjct 9996228 GATACTCGGAAACAATGAATCCTTTGAGCCATACACCACGAATATCTACACTCGAAGGGT 9996287 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 || | || || |||| ||| | ||| | ||||| ||| |||| || || || || Sbjct 9996288 ACTATCAGGAGAGTTCCAAGTCGTGAACCATCACCTGCTAAGGGATCTCACCGAGCTTGG 9996347 Query 95253 TGTGTGGG---GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAA 95309 | |||||| |||| | | || ||| | | || ||| || ||| |||| || Sbjct 9996348 TTTGTGGGACAGTGAAATG---AAAAACACAATACTGAAAAACAAAGGGTCCATCCAAAA 9996404 Query 95310 CATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCA 95369 ||| ||| ||||||||||| ||||| || || |||||||| |||||||| | || Sbjct 9996405 CATAGACAGAATCCCGGAGGACATAAAGGCTCTGTATAAGACCGTTTGGGAGATTTCTCA 9996464 Query 95370 GCGCGTGATACTC 95382 | | ||||||| Sbjct 9996465 GAAGGCGATACTC 9996477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494644440066560