Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3821 104 2e-17 seq1961 96.9 3e-15 seq6 87.8 1e-12 >seq3821 Length=25878 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||||||| | ||||||| || |||||||| || ||||||| | ||| || Sbjct 428 CAGAACACCATCTTTGATTGGGTGCGAGACCACAGGGTGCATCACAAGTTCAGTGAGACC 369 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 | |||||||| |||||| | ||||||||||||| ||| | |||||||| ||||||||| Sbjct 368 AACGCCGACCCTCACAACTCTAACAGGGGGTTCTTCTTCGCCCACGTGGGCTGGCTCATG 309 >seq1961 Length=68758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 |||||| || || |||||||| |||||||||| | || ||| |||||||| |||| Sbjct 19407 AGTGGGCGCGTGACCACAGGGTGCACCACAAGTTCAGCGAGACGGACGCCGACCCTCACA 19466 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 |||| | | | ||||||| |||||||||||||| ||||| || || ||| |||| | Sbjct 19467 ACGCTACCCGCGGGTTCTTCTTCTCGCACGTGGGTTGGCTACTGGTGCGCAAACACCCGG 19526 Query 108584 ACGTGA 108589 |||||| Sbjct 19527 ACGTGA 19532 Score = 95.1 bits (104), Expect = 9e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| | |||||||| ||||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 20016 GCTATAGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCCTGGGACTACAAGGCGGCC 20075 Query 108943 GAGTTGGGGAACGAC 108957 ||| |||||||| || Sbjct 20076 GAGCTGGGGAACTAC 20090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 || || |||||||| ||||||||||| |||||||||||||||| ||||||||| | ||| Sbjct 51522 GCCCTGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCCTGGGACTACAAGACGGCC 51463 Query 108943 GAGTTGGGGAACGAC 108957 ||||||||| || || Sbjct 51462 GAGTTGGGGGACTAC 51448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||| || || |||||||| |||||||||| | || ||| |||||||| |||||| Sbjct 55496 TGGGCTCTGGACCACAGGGTGCACCACAAGTTCAGCGAGACGGACGCCGACCCTCACAAC 55437 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 ||||| | |||||| |||||| |||||||| |||||| | |||| | |||| ||| Sbjct 55436 GCCAAACGAGGGTTCCTGTTCTCCCACGTGGGTTGGCTCGTACTGACACCGCACCCTGAC 55377 Query 108586 GTG 108588 ||| Sbjct 55376 GTG 55374 >seq6 Length=23341858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| || ||||| || || |||||| ||||| | |||||||| || ||| Sbjct 8203414 TGGGTGCGTGACCACAGACAACATCATAAGTACAGCGACACCAACGCCGACCCTCATAAC 8203355 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 ||||| ||||| |||| ||||| || | |||||||||||||||| || |||| ||| Sbjct 8203354 GCCAAGAGGGGATTCTTCTTCTCTCATATCGGATGGCTCATGATGAGGAAACACCCGGAC 8203295 Query 108586 GTGATC 108591 || ||| Sbjct 8203294 GTCATC 8203289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381713541225984