Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq2 87.8 2e-12 >seq4 Length=10813142 Score = 132 bits (146), Expect = 5e-26 Identities = 655/1020 (64%), Gaps = 54/1020 (5%) Strand=Plus/Minus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCAC 145911 || || || ||||| ||||||||||| | | | || || |||||||| | | || | Sbjct 9996527 TTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATCTGGAGTATCGCC 9996468 Query 145912 TT-TGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTC 145970 || ||| ||| ||||| |||| ||| | ||| |||| | || || || ||| ||| Sbjct 9996467 TTCTGAGA-AATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCCGGGATTCTGTC 9996409 Query 145971 AATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGT---- 146026 ||||| || | ||||| || | || |||| |||| || ||| | ||| Sbjct 9996408 TATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC---ACTGTCCCA 9996352 Query 146027 -AAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCC 146084 ||| |||| || ||| || | | || | ||||| || || || ||||| || Sbjct 9996351 CAAAC---CAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAACTCTCC 9996295 Query 146085 GGCGAGAACGCGCCTCAGA---TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTT 146141 | || || ||| || || | || ||||| | ||||| || || || ||||| Sbjct 9996294 TGATAGTAC---CCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTGTT 9996238 Query 146142 ACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCAC 146201 ||||||||||| || || | ||| |||||||| || | || | |||||||||||| Sbjct 9996237 TCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTCAC 9996178 Query 146202 GCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATA 146261 || ||| ||| |||| ||| | ||||| ||||||| | || ||| Sbjct 9996177 ACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMA---GTAGGAGT 9996121 Query 146262 GATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCT-CGTACGATT 146320 | | | ||||||| || | | | || | | | || || || | |||| | Sbjct 9996120 CACACCCCACATGTCGTACTGAAGAATACC-CTTACTAACTGGACATCCTTCATACGTCT 9996062 Query 146321 CATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGG 146380 | || || || ||| || || || || ||||| |||| ||| |||| |||| Sbjct 9996061 CGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGG 9996002 Query 146381 TCTCCGCGAT-----CATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATC 146435 | || || ||| | || || || | |||| |||||| | || | Sbjct 9996001 TTTCAAAAATTTGAGCATTCAATTTGCG----TGAAC-CCTCACTGTCGAAAGGAAGCCG 9995947 Query 146436 GAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTT 146495 | || | ||||| ||||| ||||| || || |||| |||| ||| ||||| || | Sbjct 9995946 CATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCAT 9995887 Query 146496 GTT--ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGA 146553 ||| | ||| | || | ||| ||||||| ||| || ||||||||||| ||| Sbjct 9995886 GTTGGAGAGTTTG--GCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGA 9995829 Query 146554 TTACGCACGACAATTTTCGTCAAACGAT--TCAGCAGGACATAGTCAAATGTTTTAGTTT 146611 || | | || | ||| | | ||| | | ||| |||| | || | | || || Sbjct 9995828 TTCCTCGTCACTAGTTTGG--ATACGTTCTTTAGCTTGACAAAATCGTAAGAGTT-GTCC 9995772 Query 146612 TAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCT 146671 || || || || |||||||||| || |||||||||||||| || ||| |||| || Sbjct 9995771 AAA--TTAACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAG 9995714 Query 146672 TGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttt 146731 || ||| | ||||||||| | ||| || ||||| |||||||| | || | ||| | Sbjct 9995713 GTGAGCTATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCT 9995654 Query 146732 tttGGTT--ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||||| ||| | |||| || | ||||| || |||||||| ||| ||| ||||| Sbjct 9995653 GCTGGTTGGACT--TCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTC 9995596 Query 146790 GACATTGGTCTCGACGATGAATCTAAACAAATCT-CTG-GCCTTTACTTGTCTTTCGTAC 146847 || | || ||| | ||| | | |||| || ||| ||||| |||||| || | ||| Sbjct 9995595 TACCTGGGACTCRATGAT--AGCGTGCCAAAGCTGCTGTGCCTTAACTTGTTTTACATAC 9995538 >seq2 Length=39772498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| | ||||| || || ||||| || |||||| |||| Sbjct 2636745 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 2636804 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||| || || || || |||||||||||| || || ||| | | ||| Sbjct 2636805 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCG 2636864 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | ||| || |||| ||| | || ||||| ||||| || || || || Sbjct 2636865 ATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 2636924 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 2636925 ATCTGCAT 2636932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| ||||| ||| | ||||| || || ||||| || |||||| ||| Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | ||||||||| || || || || ||||||||||| || || ||| | | | Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||||| | ||| || |||| ||| | || ||||| ||||| || || || | Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 4310787 AGATCTGCAT 4310778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475425100272640