Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 150 3e-31 >seq4 Length=10813142 Score = 150 bits (166), Expect = 3e-31 Identities = 450/687 (66%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 |||| || || ||||||| | ||| | || ||| | | | |||||| ||||| || || Sbjct 9996659 TCCAAAGTAAATTGAATGG-GATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||||||||| | ||| ||||| | ||||| || | || || | | || || || Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 || ||||| ||||| || ||||||||||| || ||||| | | |||||||||||||| Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 | || || | |||||| ||||||||||| || ||||| ||| | | ||| | Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421 Query 204082 AGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || | ||| | | || | ||| || || |||| || | | | | || | | Sbjct 9996420 CGGGA-TTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTT 9996362 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | |||||| || | | | | || |||| | |||||| |||| | || || | Sbjct 9996361 CACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGA 9996302 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | ||||| || || |||| ||| ||| | | || ||||| |||| || || | || | Sbjct 9996301 ACTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCAT 9996242 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 |||| |||| ||||| || || || || ||||| || || || || || ||||| | Sbjct 9996241 TGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTC 9996182 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTT 204380 |||||| | | | | | || |||| | ||| || || | | | || Sbjct 9996181 TCACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 204381 TCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCG 204440 |||| |||||||||||| |||||| || || | ||| ||||| | || | |||||| Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCT 9996062 Query 204441 GATAAGGCTGATCCTCTTCTGCCAGCTTGC-ACGAGGCGGCCATGGCGTGATAGTACATG 204499 || ||| | ||||| |||| | || || | | ||| | | ||||| ||| Sbjct 9996061 CGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCG-TAGTAAATG 9996003 Query 204500 GTCTCAAAGATCTGAACGTTTAATCTG 204526 || ||||| || ||| | || ||| || Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTG 9995976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795028611292160