Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq281 82.4 9e-11 >seq2 Length=39772498 Score = 122 bits (134), Expect = 1e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 46395 ATGTACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTG 46453 |||| ||| ||||| || || ||||||||||| || |||||| |||| || ||||||||| Sbjct 4310976 ATGT-CTCACCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTG 4310918 Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | ||||||||||| | || | | ||||||||| ||||| | Sbjct 4310917 CCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCC 4310858 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||| || ||||| || | |||||||| ||||| ||||| Sbjct 4310857 TTCACATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGG 4310798 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| Sbjct 4310797 GTCTTCACGAAGATCTGCAT 4310778 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || |||||| |||| || ||||||||||| ||||| | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | | |||||||||| ||||| ||| | || Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 2636862 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || ||||| || | |||||||| ||||| ||||| || || || | Sbjct 2636863 CGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 2636922 Query 46584 AGATTTGCAT 46593 |||| ||||| Sbjct 2636923 AGATCTGCAT 2636932 >seq281 Length=276453 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 | || || || ||||||||||| || ||||| |||| || ||||||||||| ||||| | Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 | | ||||||||||| | || | | |||||||||| ||||| Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTT 164629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565148414046720