Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq7 118 1e-21 seq281 98.7 1e-15 >seq2 Length=39772498 Score = 134 bits (148), Expect = 1e-26 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||||| || Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| |||||||| ||| | ||||| Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAG 4310897 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 4310898 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 4310957 Query 38424 ATCCA-AAAGG 38433 || || ||||| Sbjct 4310958 ATTCAGAAAGG 4310968 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||||| | Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| |||||||| ||| | ||||| Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAG 2636813 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 2636812 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2636753 Query 38424 ATCCAAAAGG 38433 || || |||| Sbjct 2636752 ATTCAGAAGG 2636743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||| || | || || || || | Sbjct 4313070 AATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTC 4313129 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | |||| ||||||| ||||| || ||||| || | || || Sbjct 4313130 TGATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCA 4313189 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420 |||| | || || | || |||||||| || || || | || ||| ||| |||||| Sbjct 4313190 ACAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCA--GACTAC 4313247 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| || ||| | || || ||| |||| || || Sbjct 4313248 AACATCCAGAAAGAATCAACTCTTCATCTGGTTCTTCG 4313285 >seq7 Length=109384913 Score = 118 bits (130), Expect = 1e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 133164 CACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTG 133223 ||| || || || |||||| ||||||||| || || | |||||| ||||| ||||| Sbjct 105116698 CACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTG 105116757 Query 133224 AAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAG 133283 ||| || |||||||||| ||| ||| ||| |||||||||||| ||| | || || || Sbjct 105116758 AAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCTTTCCACAAG 105116817 Query 133284 ATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342 ||||| || || ||||| || || || || || || || || || |||||||||| Sbjct 105116818 GTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAAT 105116876 >seq281 Length=276453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| ||| | ||||| ||||| ||||| | ||| ||||| |||||||| Sbjct 164638 GACAAGGAGGGAATCCCCCCAGACCAGCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAA 164697 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 |||| ||||||||| |||||||||||| || || | Sbjct 164698 GACGGKCGCACCCTCTCCGACTACAACATTCAGAARG 164734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500093172490240