Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq7 138 1e-27 >seq4 Length=10813142 Score = 179 bits (198), Expect = 4e-40 Identities = 700/1102 (64%), Gaps = 24/1102 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 |||| |||||| | ||| |||| | |||| ||||| || | ||||||||| || || Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 |||| || || |||| || |||||||||||| || | ||| | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||| || || || || || || || |||||||| |||||||| | ||| || ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 | | || || | || | |||||||| || || ||||| | || ||||| || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 47217 GGGA----GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattc 47272 |||| | || | ||||| || || ||| ||||| | ||| ||||||| | ||| Sbjct 9996419 GGGATTCTGTCTA-TGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC 9996361 Query 47273 atttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAA 47332 | | ||| | | || || | ||| || ||| | || || | ||| || Sbjct 9996360 ACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAA 9996301 Query 47333 TTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATT 47392 ||||| |||||||| || || | || ||||| | || ||||| || | |||||||| Sbjct 9996300 CTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATT 9996241 Query 47393 ATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTC 47451 ||||| | || || ||||| || ||||||||||| | ||||| || ||| | |||| Sbjct 9996240 GTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAA-GAAGAAGAGAGTTTC 9996182 Query 47452 TTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAA 47511 | || |||| | || | ||||||||| | | | ||| Sbjct 9996181 TCACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 47512 CAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTT 47571 ||| ||| | || || |||||||| || ||||| | ||| | || | ||| || | Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCT 9996062 Query 47572 TATAAGGACCGTATAGTTT---AGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 || || || ||||| || || |||||||| || |||||||| | || || | Sbjct 9996061 CGTATGGCCC---CAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAA 9996005 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTG-CTTCTGA-TGATTCAAAAGGATANNN 47686 | |||||||| |||| || | || | || || | || || |||||| Sbjct 9996004 TGGTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTG--TCGAAAGGAAGCCG 9995947 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 || | ||| |||| ||||| | || || ||||| |||| || | | Sbjct 9995946 CATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCAT 9995887 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA-N 47805 || || | | ||||| | | |||||| | || |||||| || || || ||| Sbjct 9995886 GTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATT 9995827 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATC---AAACTTGTTATTTA 47862 | | |||| ||| || |||||| | | |||| Sbjct 9995826 CCTCGTCACTAGTTTGGATACGTTCT-TTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT 9995768 Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||||||| | || | || || || || | ||||| ||||| | ||||| || | || Sbjct 9995767 TAACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAG 9995709 Query 47923 -TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 |||||| | || || | |||||||| | ||| ||||| || || | ||| || || Sbjct 9995708 CTATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGG 9995649 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || |||||||||| ||||| |||||||| | ||||| || ||||||| ||| Sbjct 9995648 TTGGACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGG 9995589 Query 48042 GATTCAATGATAGATTTCCAAA 48063 || || ||||||| | ||||| Sbjct 9995588 GACTCRATGATAGCGTGCCAAA 9995567 >seq7 Length=109384913 Score = 138 bits (152), Expect = 1e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || ||||||| ||| || | | ||| ||||||||||||||||| || || || || Sbjct 105116693 TCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCT 105116752 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || ||||| || ||||| || || ||||| || | || ||||| || |||||||| Sbjct 105116753 ATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCTTTCC 105116812 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || | ||||||||||| || |||||| || ||||| ||||||| |||||||| || Sbjct 105116813 ACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATG 105116872 Query 19405 AAATGTTTTTCATCTG 19420 |||| | | ||||||| Sbjct 105116873 AAATATCTCTCATCTG 105116888 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | || ||||| || |||| ||||| ||||| || || | |||||| ||| Sbjct 105115034 AATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATTGCAGCAAAGCTACCA 105115093 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TC 19130 ||||| || || || || || |||||||| |||| || | |||||| | | ||| || Sbjct 105115094 GAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCTCCGAATGTGGCAGTC 105115153 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 ||| |||||| | |||||||| |||||||| || ||||||||||| || || Sbjct 105115154 TCGGAGCTGA-TCCATTCTAAGGCCCAATCTGCCTTCTTCTTCACACATGGCATGGTTTC 105115212 Query 19191 TATAGAATTAAATAGATA 19208 || | ||| || || || Sbjct 105115213 AATTGCATTGAAAAGGTA 105115230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 || |||| |||| || |||||||| | |||||||| |||||||| || |||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAA 19564 | | ||| || ||| | |||| || || || | |||||| | ||| ||||||| | | Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTTCTCTCA 105117267 Query 19565 GAATAGGTTCCATTT 19579 || || |||| || Sbjct 105117268 AAAGTGGCTCCAGTT 105117282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562019312279040