Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 161 8e-34 seq247 159 3e-33 seq2 138 9e-27 seq259 125 6e-23 seq228 95.1 1e-13 seq5428 87.8 1e-11 >seq8 Length=79225393 Score = 161 bits (178), Expect = 8e-34 Identities = 363/545 (67%), Gaps = 2/545 (0%) Strand=Plus/Minus Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052 |||| || ||||| || || ||||| ||| || || || || ||||| | || || | Sbjct 66491600 CTATTGGAATAGACTTGGGCACCACGTATTCATGCGTAGGGGTGTGGCAGCAAGGGAAGG 66491541 Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 | || || || ||||| |||||||||||| ||||||| ||| ||||| | ||||| | Sbjct 66491540 TGGAGATCATYGCCAACGATCAAGGTAACCGAACTACACCAAGCTATGTGGCGTTCACAG 66491481 Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172 | || |||| | |||| || || || || |||| | | || || | |||| Sbjct 66491480 ACACCGAACGCCTTATTGGAGACGCCGCCAAGAATCAGGTGGCGATGAACCCCAAGAATA 66491421 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || || || || || | ||||| || | || | ||| ||| | |||| | Sbjct 66491420 CYGTGTTCGACGCCAAGCGCCTGATTGGCCGACGCTTCGACGATCCGAAGATCCAGGAGG 66491361 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 ||||||| || ||||| ||| | |||| |||| || ||||| | ||||||| || Sbjct 66491360 ATATGAAACACTGGCCGTTCAAGGTTGTGAATGAGGGCGGTAAACCCAAGATTGAAG-TA 66491302 Query 550293 CTCATGAAGGAT-CTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 |||| | || || |||| | || ||| |||| || |||||| | | Sbjct 66491301 GAATAYAAGGGTGAAGTGAAGAGATTTGCCCCTGAAGAAATCAGTTCCATGGTTCTGACA 66491242 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||| | | ||||| |||| |||| |||| ||||| || || || Sbjct 66491241 AAGATGAGAGAGACAGCAGAGGCTTACCTTGGCGGCAGTGTTAGAGATGCTGTCATCACA 66491182 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||| || ||||| |||||||| | || || || || ||||||||| || || Sbjct 66491181 GTTCCAGCTTACTTTAACGACTCACAGAGACAGGCCACYAAGGATGCTGGAGCCATCGCG 66491122 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || | || || || || || || || || || || |||||||| || || ||||| ||| Sbjct 66491121 GGTATAAACGTCCTGCGCATCATAAACGAGCCCACGGCTGCTGCCCTGGCTTATGGTCTT 66491062 Query 550532 GATAA 550536 ||||| Sbjct 66491061 GATAA 66491057 >seq247 Length=300203 Score = 159 bits (176), Expect = 3e-33 Identities = 362/545 (66%), Gaps = 0/545 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || || | || ||||| ||| ||| || |||||||||||| |||||||| Sbjct 153984 GCTATTGGAATCGACCTCGGCACCACGTATTCTTGCGTGGGTGTTTGGCAACATGGTAAA 154043 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| || || || || |||||||||||||| ||| || || | || || Sbjct 154044 GTGGAGATTATCGCRAACGACCAGGGTAACAGAACTACGCCAAGCTACGTCGCGTTTACC 154103 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || | |||||||| || ||| | || | | | || || | || Sbjct 154104 GATACAGAACGCCTAATCGGTGATGCMGCCAAAAACCAGGTCGCCATGAACCCAAAGAAC 154163 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 | | | || || || ||||| || || || |||| ||| | || | | | || || Sbjct 154164 AGTGTCTTCGACGCCAAACGATTGATCGGGCGAAGGTTTGACGACCCAAAGATCCAAGCT 154223 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| ||||| ||| | || || | | ||| ||||| | || | | Sbjct 154224 GATATGAAGCACTGGCCGTTCACCGTGGTCAACGACTGTGGCAAACCCAAGATCCAGGTA 154283 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || | || || || || | || ||| | || || ||||| | | Sbjct 154284 GAGTATAAGGGCGAAGTGAAGACGTTCGCCCCTGAAGAGATCAGTTCAATGGTGCTTACC 154343 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | | || || || | || | ||| ||||| || || || Sbjct 154344 AAGATGAAAGAGATCGCAGAAGCGTTCYTGGGGACATCTGTTCGTGATGCTGTCATCACA 154403 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| ||||| ||||| |||||||| || || || || ||||||||||| || ||| Sbjct 154404 GTACCTGCATACTTTAACGACTCACAGCGACAGGCCACCAAAGATGCTGGTGCCATCGCT 154463 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||||| ||||| | |||||||| ||||| || || || || || || || || || Sbjct 154464 GGCCTTAACGTTCTCAGGATTATCAACGAACCGACAGCAGCGGCTCTCGCGTACGGTCTA 154523 Query 550532 GATAA 550536 ||||| Sbjct 154524 GATAA 154528 >seq2 Length=39772498 Score = 138 bits (152), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || |||||||| || |||||| || ||||| || | || |||||| Sbjct 4313288 AGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGTTCTT 4313229 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||||||||| |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 4313228 CCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCC 4313169 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || || ||||| |||||| ||| |||||||||| | ||| ||| || || Sbjct 4313168 TTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTAC-TTCCAGTGT 4313110 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || ||||| || ||||| |||||||| Sbjct 4313109 AATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCAT 4313071 >seq259 Length=293214 Score = 125 bits (138), Expect = 6e-23 Identities = 360/547 (66%), Gaps = 24/547 (4%) Strand=Plus/Plus Query 368604 TAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTG 368663 ||| | |||||| ||||| || || | ||| ||||| ||||| ||||| | ||||| Sbjct 106333 TAGATATTGGGGCACTCCCATACCCTTGTGGGTCTCTGAAGATGGAGAAGAGGTAGTTTG 106392 Query 368664 TATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACA 368723 ||| || ||| |||| | || | || |||| | ||| ||| | ||| | || Sbjct 106393 TATTGGAAGCATTGCAGAACTTGAACAGTTGACTGGCG---AAACTATAAAAGATATTCA 106449 Query 368724 TATTGATAAAATTGATCACATTAAAATTCCATC--AAAGAA-AGGAAAAGGTTTATTGTC 368780 || || | ||||||||| | | || ||||| || | ||| || | | Sbjct 106450 TAGAGAGAGCATTGATCACTTGACTATCCCATCTCAACGTCCAGGCAAGCCACCACTTAA 106509 Query 368781 TCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAAT 368840 |||| | | || || ||||| ||||| || ||||| || ||||| |||| ||| | Sbjct 106510 GAGAGTAGCTGAGGTCTTTGATTGTTGGTTCGAGTCAGGATCCATGCCATATGCTCAGCT 106569 Query 368841 ACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTT 368900 || ||||| ||||| || |||| | ||||| | |||| || || | ||||| Sbjct 106570 TCACTATCCTTTTGAACACAAAAAAGAATTTGA-----AGAAAGTTTTCCTG-CAGATTT 106623 Query 368901 TGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCAC 368960 | | ||||| ||||||||||| | || ||||| || || || | || | ||||| Sbjct 106624 TATTGCAGAAGGTATTGATCAAACCAGGGGATGGTTCTACACATTAATTGTTATCTCCAC 106683 Query 368961 AGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATC 369020 |||| | ||| | ||| | | || || || | || | | |||| | || ||| || Sbjct 106684 AGCTTTATTCAACAAAGCACCCTTCAAGAACCTTATTGCTAATGGTTTGATTCTTGCTTC 106743 Query 369021 TGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCCTAATATTTTAA---- 369076 |||||| ||||| ||||||||| | ||| || || | ||||| | || || Sbjct 106744 TGATGGGCAAAAAATGTCAAAACGAAAGAAAAACTACCCTGATCC----AGTTGAAGTCG 106799 Query 369077 TTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTCA--TCACCTGTAGTAAA 369134 | | |||| |||||||||| | || || | || | || ||| |||||||| |||| Sbjct 106800 TCAACAAATATGGTGCTGATGCATTAAGGCTTTA--TCTTATCAACTCACCTGTGGTAAG 106857 Query 369135 AGCAGAA 369141 ||||||| Sbjct 106858 AGCAGAA 106864 >seq228 Length=312174 Score = 95.1 bits (104), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| || | ||||| ||||| ||||| ||||| | ||| |||| ||| Sbjct 170299 GCTGTGGGTATTGACCTGGGAACTACATACTCCTGTGTCGGTGTGTTCCAACATGGAAAA 170358 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| |||||||| || || || ||| |||| || ||| |||||| ||||||| Sbjct 170359 GTTGAAATCATTGCCAACGACCAGGGCAACCGAACAACACCAAGTTATGTAGCTTTCACA 170418 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || || ||| | | |||||||| || ||| | |||| Sbjct 170419 GACACAGAAAGACTGATAGGTGATGCTGCGAAAAACCAAG 170458 >seq5428 Length=11307 Score = 87.8 bits (96), Expect = 1e-11 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 370650 AATGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCT 370709 ||||| | | ||| || || ||||||||||| |||||||||||| | |||||||||||| Sbjct 10419 AATGCTAGTACTGACGAGATAAAAAAAGCATATAAAAAACTAGCATTAAAATATCATCCT 10478 Query 370710 GATAGAAACAAAAGTCCT---GATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACAT 370766 || ||||| || | || || || ||||| |||||| || | | |||| || Sbjct 10479 GACAGAAATCCTGGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAGTAACAGCTGCATAT 10538 Query 370767 GGTATTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGTATGGATGGT 370823 | |||| ||||| ||||||| | | | ||||||| | | |||| |||||| Sbjct 10539 GAAGTTCTATCTGACTCTGAAAAAAGAGCAGGTTATGATCGTTATGGTCACGATGGT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028622462880640