Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq259 170 1e-36 seq8 163 2e-34 seq247 141 6e-28 seq2 122 6e-22 seq228 118 7e-21 >seq259 Length=293214 Score = 170 bits (188), Expect = 1e-36 Identities = 368/546 (67%), Gaps = 22/546 (4%) Strand=Plus/Plus Query 297132 TAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGATGATGGTGAAGAAATAATTTG 297191 |||||||||||| || || || || | ||| ||||| ||||| ||||| || |||| Sbjct 106333 TAGATATTGGGGCACTCCCATACCCTTGTGGGTCTCTGAAGATGGAGAAGAGGTAGTTTG 106392 Query 297192 TATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATTGATAATATTAATGATTTACA 297251 |||||| ||| |||| | || | || | || || | ||| || ||| | || Sbjct 106393 TATTGGAAGCATTGCAGAACTTGAACAGTTGACTGGC---GAAACTATAAAAGATATTCA 106449 Query 297252 TATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAAGGAAAAGGCATGTTATCTCG 297311 || || | |||||||| | | || || |||| || | ||||| | | | | Sbjct 106450 TAGAGAGAGCATTGATCACTTGACTATCCCATCTC---AACGTCCAGGCAAGCCACCACT 106506 Query 297312 T------GTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCA 297365 | || | | || || ||||||||||| || ||||| || ||||| |||| ||| Sbjct 106507 TAAGAGAGTAGCTGAGGTCTTTGATTGTTGGTTCGAGTCAGGATCCATGCCATATGCTCA 106566 Query 297366 AATTCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGA 297425 |||| |||||||||||| | | ||| ||| | | || || | |||||| Sbjct 106567 GCTTCACTATCCTTTTGAACA---CAAAAA---AGAATTTGAAGAAAGTTTTCCTGCAGA 106620 Query 297426 TTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTC 297485 |||||| ||||| ||||||||||| || || ||||| || || ||| | ||| | || Sbjct 106621 TTTTATTGCAGAAGGTATTGATCAAACCAGGGGATGGTTCTACACATTAATTGTTATCTC 106680 Query 297486 TACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGC 297545 |||||| |||| |||||| || | || || || | |||| || || | || || Sbjct 106681 CACAGCTTTATTCAACAAAGCACCCTTCAAGAACCTTATTGCTAATGGTTTGATTCTTGC 106740 Query 297546 AGCTGATGGACAAAAAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAAATATTTTGAT 297605 ||||||| ||||||||||||||| | || || || ||||||||| | | | Sbjct 106741 TTCTGATGGGCAAAAAATGTCAAAACGAAAGAAAAACTACCCTGATCCAGTTGAAGTCGT 106800 Query 297606 GGATAAATATGGTGCAGATACTTTACGTCTTTATTTATTATCAA--CACCTGTAGTTAAA 297663 | ||||||||||| ||| | ||| | ||||| | ||||||| ||||||| || | | Sbjct 106801 CAACAAATATGGTGCTGATGCATTAAGGCTTTA--TCTTATCAACTCACCTGTGGTAAGA 106858 Query 297664 GCCGAA 297669 || ||| Sbjct 106859 GCAGAA 106864 >seq8 Length=79225393 Score = 163 bits (180), Expect = 2e-34 Identities = 395/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| || || || || || || || || |||| || ||||| | || || || Sbjct 66491598 ATTGGAATAGACTTGGGCACCACGTATTCATGCGTAGGGGTGTGGCAGCAAGGGAAGGTG 66491539 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| || |||||||| |||| |||||| ||||| | || || || Sbjct 66491538 GAGATCATYGCCAACGATCAAGGTAACCGAACTACACCAAGCTATGTGGCGTTCACAGAC 66491479 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || |||| ||||||||||| || || || |||| | || || || ||||| Sbjct 66491478 ACCGAACGCCTTATTGGAGACGCCGCCAAGAATCAGGTGGCGATGAACCCCAAGAATACY 66491419 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || || | ||||||| || || || ||| | | |||| ||| Sbjct 66491418 GTGTTCGACGCCAAGCGCCTGATTGGCCGACGCTTCGACGATCCGAAGATCCAGGAGGAT 66491359 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCA--A 474629 ||| || ||||| || ||||| | |||| || |||||||| | || |||| | | Sbjct 66491358 ATGAAACACTGGCCGTTCAAGGTTGTGAATGAGGGCGGTAAACCCAAGATTGAAGTAGAA 66491299 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 || | | |||||| || |||| | || ||| |||| ||| |||||| | | | Sbjct 66491298 TAYAAG--GGTGAAGTGAAGAGATTTGCCCCTGAAGAAATCAGTTCCATGGTTCTGACAA 66491241 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| | || ||||| || | ||||| || || || Sbjct 66491240 AGATGAGAGAGACAGCAGAGG-CTTACCTTGGCGGCAGTGTTAGAGATGCTGTCATCACA 66491182 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| || ||||| || || || | || || || || ||||| ||| || || Sbjct 66491181 GTTCCAGCTTACTTTAACGACTCACAGAGACAGGCCACYAAGGATGCTGGAGCCATCGCG 66491122 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || | || || || || || || || || || || || |||||||||||| Sbjct 66491121 GGTATAAACGTCCTGCGCATCATAAACGAGCCCACGGCTGCTGCCCTGGCTTATGGTCTT 66491062 Query 474869 GATAAGAATTCTGACA---AAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 |||||||| ||| | | ||||| || ||||| ||||||||| ||| || Sbjct 66491061 GATAAGAA-TCTTAAAGGTGAGAAG--AACGTTTTGATCTTTGATCTTGGGGG 66491012 >seq247 Length=300203 Score = 141 bits (156), Expect = 6e-28 Identities = 217/305 (71%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 || || | || ||||| ||||| |||||||| | || ||||||||| ||| ||| ||| Sbjct 155140 ATGTTCTTCTAGTTGATGTAACACCACTTTCTCTTGGCATTGAAACAGCTGGTGGGGTTA 155199 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA--AAAATCAAAAGTATTTTC 475989 |||| || | | || | ||| ||| || || ||||| | | ||||| | || | Sbjct 155200 TGACAAAGATAGTCGAACGTAATGCTCGCATTCCTTGCAAGCAGACTCAAACTT--TTAC 155257 Query 475990 CACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATT 476049 || || || || ||||| | |||| || | ||| | |||||||||||| | | Sbjct 155258 AACATACTCAGACAATCAGCCCGCTGTCACGGTTCAAGTTTTTGAAGGTGAACGCGCCAT 155317 Query 476050 CACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCA 476108 |||||||| |||||| |||||||| ||||| ||||| ||| || || ||||||| | Sbjct 155318 GACTAAAGACAATAACCTTCTTGGAACCTTTAA-CTTGACAGGCATACCACCTGCTCAGA 155376 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTA 476168 ||||||| || |||| ||||| || |||||| | || || || || ||| | || || | Sbjct 155377 GAGGAGTCCCCAAAATAGAAGTCACCTTTGATCTAGACGCCAACGGCATTTTGAACGTGA 155436 Query 476169 CTGCT 476173 | ||| Sbjct 155437 CCGCT 155441 >seq2 Length=39772498 Score = 122 bits (134), Expect = 6e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || |||||||| || |||||| | || || || | || || Sbjct 4313292 ACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGT 4313233 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| |||||||| || || ||||| || || | |||||||| ||||| ||||| Sbjct 4313232 TCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCC 4313173 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || || || ||| ||| || || ||||||| | ||| || Sbjct 4313172 TTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAG 4313113 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||||||||||||||| ||||| ||||| Sbjct 4313112 TGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTG 4313074 >seq228 Length=312174 Score = 118 bits (130), Expect = 7e-21 Identities = 248/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | | ||||| || ||||| ||| ||||||||| | || ||| Sbjct 170865 GATGCAAAACGTCTTATTGGGCGACGGTTTGAAGATCAAACTGTCCAAGCAGACATGAAA 170924 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATACACGCA 474637 |||||||| |||| || || |||| |||||| | || ||| || | Sbjct 170925 CATTGGCCATTTACAGTCATCAATGACAACACCAAACCAAAGATTCAAGTTTCGTACAAA 170984 Query 474638 GGTGAAA-CTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAA 474696 || |||| | |||| | ||| ||| | || | ||| ||||| | | || ||||| Sbjct 170985 GGAGAAAACAAAACTTTCTTCCCCG-AGGAAGTGAGTTCCATGGTCCTTACAAAGATGAA 171043 Query 474697 ACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTGTTCCA 474754 |||| || ||| | || ||||| ||||| | | || | |||||| | || ||||| Sbjct 171044 GGAAACAGCTGAGG-CTTA-CTTGGGCAAGACAATCACAAACGCAGTAGTCACAGTTCCT 171101 Query 474755 GCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTT 474814 ||||| || |||||||| || | ||||| || || ||||| ||| ||||| |||||| Sbjct 171102 GCATACTTCAATGATTCACAGAGACAAGCTACAAAGGATGCTGGAGCCATTGCTGGTCTT 171161 Query 474815 AATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 || || | | || || || || ||||| ||||| || |||| ||||||||||||||| Sbjct 171162 AACGTACTTAGGATAATAAACGAGCCAACTGCAGCAGCCATTGCCTATGGTCTTGATAAG 171221 Query 474875 AA 474876 || Sbjct 171222 AA 171223 Score = 102 bits (112), Expect = 5e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 |||||||| | |||||||| ||| ||||| | ||| | ||| |||| ||||| ||| Sbjct 170305 GGTATTGACCTGGGAACTACATACTCCTGTGTCGGTGTGTTCCAACATGGAAAAGTTGAA 170364 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||| ||||| || || ||||||||||| ||||| |||| || || || Sbjct 170365 ATCATTGCCAACGACCAGGGCAACCGAACAACACCAAGTTATGTAGCTTTCACAGACACA 170424 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 ||| || || || |||||||| ||| | |||| Sbjct 170425 GAAAGACTGATAGGTGATGCTGCGAAAAACCAAG 170458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267632891164928