Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 >seq2 Length=39772498 Score = 138 bits (152), Expect = 2e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | ||| || | || | ||| | ||| | ||||| || || || |||| Sbjct 4313299 TACCACCACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTG 4313240 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | | || | | || || | |||||| || ||||| |||| ||||||||| || || | Sbjct 4313239 AAAGTGTTCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAG 4313180 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 |||||||||| || || || |||||| ||||||||| || ||||| |||| ||||| Sbjct 4313179 GTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTA 4313120 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| || |||||||| ||||| || | || || | ||| || |||||| Sbjct 4313119 CTTCCAGTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 107 bits (118), Expect = 3e-18 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 |||| ||||||||| || || ||||||||||| || || || |||||| ||||||||| Sbjct 4312254 ATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTC 4312195 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || ||||| |||| |||||| || || |||||||| |||||||| | || || | Sbjct 4312194 TCGATTGTATCAGACGCTTCTACCTCCAGTGTAATGGTCTTACCAGTGAGAGTYTTGACR 4312135 Query 172059 AATATCTGCATT 172070 || || |||||| Sbjct 4312134 AAGATTTGCATT 4312123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904991902348800