Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2846 89.7 2e-12 seq6 86.0 2e-11 >seq2846 Length=43549 Score = 89.7 bits (98), Expect = 2e-12 Identities = 391/603 (65%), Gaps = 35/603 (6%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || || ||||| || || ||||| | ||||||| ||| || | ||| | ||| Sbjct 32178 GCAATCAGTCCACAGAAGTTRCAAACATGTATTCTGTAAGGATCTGAAACCTCAAACAGC 32119 Query 251464 CGACC-CTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 | | | | | ||| ||| |||||||| |||||| ||||||||||||||| || || Sbjct 32118 CTTTCACGTAG-GAACTGAGCAGCACCGTGAGAAATCTGACAATCACGCTCCATCTCTCC 32060 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG-AGTGAGATTA--AC 251579 || || || |||||||| | ||| || || || |||||| || | |||| || Sbjct 32059 AAATCGGAGGCCACCATCTCTAGCTCTGCCTTCCATAGGCTGCCGCACCAAGATCTGTAC 32000 Query 251580 CATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 | || || | | | || || || |||| ||||||||||| | | |||||| Sbjct 31999 C---GGCCCCCTTGCTCTACTGTGAATTTTGTCATCCACCATATGCTTTAACCTCTGGTA 31943 Query 251640 GAATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCT-----CCAGTTAGAGCGTTA 251694 | ||| ||| || | ||| | || || ||||| | ||| || || || | || Sbjct 31942 GTATGTGGGGCCCAAGAAAA--CTTGA--GCATT-GATCTTTCGACCTGTGTGACCATTG 31888 Query 251695 TACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCA 251754 |||| ||||| || || | | | || ||| || ||| || || | || | Sbjct 31887 AACATTACTTCATTCCCTCTCAACTGGTAGCCATATTCCTGAAGAAGTGTTGATATTTTC 31828 Query 251755 CCAATCTTGA----AT--TTGCTAAAACTG-GTGCCGTCTCCGTAAAGACCCATTTGAAT 251807 | |||| || ||| ||| | ||| | || || || | | |||| | Sbjct 31827 TGCACATTGACAGCATCATTG----AACGGAGTGGCATCACC--AATCTCTCCTTTGTTT 31774 Query 251808 CA--ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATA 251865 | ||||||||||| ||| ||| ||| || | ||||||||||| || ||| Sbjct 31773 GAGGACACTTTGCCTTGAAGGCACTCAATCAAGTGACCAATAGTCATACGGGATGGGATA 31714 Query 251866 GCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTT 251925 ||||| ||||| ||||| || || || ||| || ||| ||||| ||||| | ||| Sbjct 31713 GCATGAGGATTAATGATAATATCAGGAGTCAAGCCCTCACTTGTGAAAGGCATGT-CTTC 31655 Query 251926 TCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACC 251984 | || || ||| ||||| |||||||| || || ||||||||| ||||| || || Sbjct 31654 TTGTCTGTATTGTATTCCACACGTTCCCTTCTGGCCATGACGAGAAGCAAACTTGTCCCC 31595 Query 251985 AAT 251987 ||| Sbjct 31594 AAT 31592 >seq6 Length=23341858 Score = 86.0 bits (94), Expect = 2e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || |||||||||||||| || || | ||||| ||||| || |||||| | | |||| Sbjct 10075512 GTCTTGACAGCTGTATCAATAAGTCCCTCTCGACCTCCCATGGCGTGGAAGTAGAACTCT 10075571 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AA 302736 || || || | | | ||| |||| ||||| || | || ||| || || || Sbjct 10075572 GAAGGGGTCAGTCCGGCCAGGTACGAGTTCTCCACGAACCCCCTCGACTCAGGACCGTAA 10075631 Query 302737 TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 || || |||| | ||||| || || ||||| || |||| | |||||||||||| Sbjct 10075632 TCATC---CTTGATGAAGTGAGGGAGAGTCCTCTTGCGGAAGCCAAACGGGATACGCTTT 10075688 Query 302797 CCATCAACGTTCTGCTGTCCCA 302818 || || || |||||||| |||| Sbjct 10075689 CCTTCTACATTCTGCTGCCCCA 10075710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471577428804032