Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq4 178 1e-39
seq2 140 3e-28
>seq4
Length=10813142
Score = 178 bits (196), Expect = 1e-39
Identities = 715/1113 (64%), Gaps = 48/1113 (4%)
Strand=Plus/Minus
Query 138156 ATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGT 138215
||| | |||||| | |||| |||||| ||||| || || | |||||||||||| |||||
Sbjct 9996660 ATCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601
Query 138216 TTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAG-TAACGCGTAAGTCGGT 138273
||||| |||| ||||| | |||| | || || || ||||| | || | || | ||
Sbjct 9996600 TTTTAGGCCCAATTTCCAAC-CGTAGAAATGCATAGATGTGAGCTTAC-CAAAATTTGGC 9996543
Query 138274 TTCGCCAGAAAT----ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329
| ||| ||| ||||| | || || || ||||| ||||| || || |||||
Sbjct 9996542 T----CAGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGC 9996487
Query 138330 GGCCATGTTAATTAAATTTTTACTTTTCA----TCTCCCACACGGTCTTGTATAGATCAC 138385
|||||| | | || | ||| | | ||||||| |||||||| || ||| |
Sbjct 9996486 GGCCATCTGGAGTA----TCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCT 9996431
Query 138386 GAATATGTCG--CGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCG-CAATGATGC 138442
|||||| ||| ||| | | || ||||| ||| ||| ||| || | ||
Sbjct 9996430 T--TATGTCCTCCGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGT 9996373
Query 138443 GATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGT 138502
| ||| |||| ||| || ||| | | || | | | || ||| ||| | ||
Sbjct 9996372 GTTTT-TCATTTCACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGT 9996314
Query 138503 TTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCT 138562
| | ||| || || || || | | ||| | ||| ||| || || ||||| | ||||
Sbjct 9996313 TCACGACTTGGAACTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCT 9996254
Query 138563 CAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCA 138622
|||| ||||| |||||||| || ||||| || || | || || ||||| || | |
Sbjct 9996253 CAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAA 9996194
Query 138623 AAAGAGAATTCCGTAAACC--GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680
|||||| || | | ||| ||| ||| ||| || || || | || ||| |||||
Sbjct 9996193 GAAGAGAGTTTCTCACACCATGTGCAGCA--ATTTTTTGTTTTAGAGCCGCCCAATCCCA 9996136
Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740
|||| |||| | |||||| |||||||| | || ||| ||| | ||||
Sbjct 9996135 CAAAGMAGTAGGAGTCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACA 9996076
Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800
||||| |||| |||||| || | | | || | ||| || ||||| | ||
Sbjct 9996075 TCCTTCATACGTCTCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGC 9996016
Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCGCTCTC 138857
|| |||||||| ||||| ||| || ||| |||| || | | | || ||
Sbjct 9996015 CCCGTAGTAAATGGTTTCAAAAATTTGAGCATT---CAATTTGCGTGAACCCTCACTGTC 9995959
Query 138858 GTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGG 138917
| | || | || | | |||| || |||||||| ||||| | || | || | ||
Sbjct 9995958 GAAAGGAAGCCGCATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGG 9995899
Query 138918 GCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGAT 138977
|| || | || || || ||| || | | | ||||| || || |||| |||||
Sbjct 9995898 TCGGTGCCTCATGTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGAT 9995839
Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGT 139037
||||| | ||| | | || | || | | ||||| |||||||||| |
Sbjct 9995838 CTTGTTCAGATTCCTCGTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGA 9995779
Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097
| ||||| | | ||||| ||||||| ||||||||| | ||| ||
Sbjct 9995778 G------TTGTCC------AAATTAACAAACATGTTGACGGCAATCGAGGCCAAGTTACA 9995731
Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157
||| || | || || || ||| ||||| ||||| || | || | ||| ||||||||
Sbjct 9995730 CACAGCAATCTCATCAGGTGAGCTATATTCCACAATCTCTGTGCATAGATTGCTACACTT 9995671
Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217
|||||| || | ||| || || ||| || | |||||| ||||| || |||||||| ||
Sbjct 9995670 GATCGTTCCAAGATTCTGCTGGTTGGACTTCCTGTTACATGCATCCTTATAAAGCATGTA 9995611
Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250
||||| || ||||| || || | ||| || ||
Sbjct 9995610 GGGTGTCCCTGTTTCTACCTGGGACTCRATGAT 9995578
>seq2
Length=39772498
Score = 140 bits (154), Expect = 3e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || |||||||| || ||||| || ||||||||||| |
Sbjct 4313071 ATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCT 4313130
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | |||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct 4313131 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4313190
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | || |||||||| ||||| || |||||| |||| | ||||| || |||
Sbjct 4313191 CAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAAC 4313250
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || || ||||| || || || ||||
Sbjct 4313251 ATCCAGAAAGAATCAACTCTTCATCTGGT 4313279
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || ||||| || ||||| || || |||||||| |
Sbjct 4312124 ATGCAAATCTTYGTCAARACTCTCACTGGTAAGACCATTACACTGGAGGTAGAAGCGTCT 4312183
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | |||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct 4312184 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4312243
Query 24824 CA 24825
||
Sbjct 4312244 CA 4312245
Score = 84.2 bits (92), Expect = 2e-11
Identities = 134/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || || || || || || || ||||| || || || |
Sbjct 4310777 GATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGC 4310836
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || ||||| || ||||| || ||||| || || || ||
Sbjct 4310837 CGACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCA 4310896
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || | ||||| || || || |||||||| || | | | | | || || || ||
Sbjct 4310897 GCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 4310956
Query 24883 CATTCA-AAAGG 24893
|||||| |||||
Sbjct 4310957 CATTCAGAAAGG 4310968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449825976302080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |