Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 178 1e-39 seq2 140 3e-28 >seq4 Length=10813142 Score = 178 bits (196), Expect = 1e-39 Identities = 715/1113 (64%), Gaps = 48/1113 (4%) Strand=Plus/Minus Query 138156 ATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGT 138215 ||| | |||||| | |||| |||||| ||||| || || | |||||||||||| ||||| Sbjct 9996660 ATCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601 Query 138216 TTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAG-TAACGCGTAAGTCGGT 138273 ||||| |||| ||||| | |||| | || || || ||||| | || | || | || Sbjct 9996600 TTTTAGGCCCAATTTCCAAC-CGTAGAAATGCATAGATGTGAGCTTAC-CAAAATTTGGC 9996543 Query 138274 TTCGCCAGAAAT----ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 | ||| ||| ||||| | || || || ||||| ||||| || || ||||| Sbjct 9996542 T----CAGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGC 9996487 Query 138330 GGCCATGTTAATTAAATTTTTACTTTTCA----TCTCCCACACGGTCTTGTATAGATCAC 138385 |||||| | | || | ||| | | ||||||| |||||||| || ||| | Sbjct 9996486 GGCCATCTGGAGTA----TCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCT 9996431 Query 138386 GAATATGTCG--CGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCG-CAATGATGC 138442 |||||| ||| ||| | | || ||||| ||| ||| ||| || | || Sbjct 9996430 T--TATGTCCTCCGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGT 9996373 Query 138443 GATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGT 138502 | ||| |||| ||| || ||| | | || | | | || ||| ||| | || Sbjct 9996372 GTTTT-TCATTTCACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGT 9996314 Query 138503 TTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCT 138562 | | ||| || || || || | | ||| | ||| ||| || || ||||| | |||| Sbjct 9996313 TCACGACTTGGAACTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCT 9996254 Query 138563 CAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCA 138622 |||| ||||| |||||||| || ||||| || || | || || ||||| || | | Sbjct 9996253 CAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAA 9996194 Query 138623 AAAGAGAATTCCGTAAACC--GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 |||||| || | | ||| ||| ||| ||| || || || | || ||| ||||| Sbjct 9996193 GAAGAGAGTTTCTCACACCATGTGCAGCA--ATTTTTTGTTTTAGAGCCGCCCAATCCCA 9996136 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 |||| |||| | |||||| |||||||| | || ||| ||| | |||| Sbjct 9996135 CAAAGMAGTAGGAGTCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACA 9996076 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||| |||| |||||| || | | | || | ||| || ||||| | || Sbjct 9996075 TCCTTCATACGTCTCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGC 9996016 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCGCTCTC 138857 || |||||||| ||||| ||| || ||| |||| || | | | || || Sbjct 9996015 CCCGTAGTAAATGGTTTCAAAAATTTGAGCATT---CAATTTGCGTGAACCCTCACTGTC 9995959 Query 138858 GTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGG 138917 | | || | || | | |||| || |||||||| ||||| | || | || | || Sbjct 9995958 GAAAGGAAGCCGCATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGG 9995899 Query 138918 GCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGAT 138977 || || | || || || ||| || | | | ||||| || || |||| ||||| Sbjct 9995898 TCGGTGCCTCATGTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGAT 9995839 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGT 139037 ||||| | ||| | | || | || | | ||||| |||||||||| | Sbjct 9995838 CTTGTTCAGATTCCTCGTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGA 9995779 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 | ||||| | | ||||| ||||||| ||||||||| | ||| || Sbjct 9995778 G------TTGTCC------AAATTAACAAACATGTTGACGGCAATCGAGGCCAAGTTACA 9995731 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 ||| || | || || || ||| ||||| ||||| || | || | ||| |||||||| Sbjct 9995730 CACAGCAATCTCATCAGGTGAGCTATATTCCACAATCTCTGTGCATAGATTGCTACACTT 9995671 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 |||||| || | ||| || || ||| || | |||||| ||||| || |||||||| || Sbjct 9995670 GATCGTTCCAAGATTCTGCTGGTTGGACTTCCTGTTACATGCATCCTTATAAAGCATGTA 9995611 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||||| || ||||| || || | ||| || || Sbjct 9995610 GGGTGTCCCTGTTTCTACCTGGGACTCRATGAT 9995578 >seq2 Length=39772498 Score = 140 bits (154), Expect = 3e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| || ||||| || ||||||||||| | Sbjct 4313071 ATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCT 4313130 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | |||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 4313131 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4313190 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || |||||||| ||||| || |||||| |||| | ||||| || ||| Sbjct 4313191 CAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAAC 4313250 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || || |||| Sbjct 4313251 ATCCAGAAAGAATCAACTCTTCATCTGGT 4313279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| || || |||||||| | Sbjct 4312124 ATGCAAATCTTYGTCAARACTCTCACTGGTAAGACCATTACACTGGAGGTAGAAGCGTCT 4312183 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | |||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 4312184 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4312243 Query 24824 CA 24825 || Sbjct 4312244 CA 4312245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || || | Sbjct 4310777 GATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGC 4310836 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||| || ||||| || ||||| || || || || Sbjct 4310837 CGACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCA 4310896 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || |||||||| || | | | | | || || || || Sbjct 4310897 GCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 4310956 Query 24883 CATTCA-AAAGG 24893 |||||| ||||| Sbjct 4310957 CATTCAGAAAGG 4310968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449825976302080