Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq281 93.3 3e-14 >seq2 Length=39772498 Score = 125 bits (138), Expect = 5e-24 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| ||||| | || ||||| ||||| || ||||||| Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | ||||| ||||||||| | || | ||||||||||| | || || || || || Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--ATT 2636860 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | || ||||| || || | ||| |||||||| || || |||||||| || Sbjct 2636861 CTCGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 2636920 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 2636921 GAAGATCTGCAT 2636932 Score = 122 bits (134), Expect = 6e-23 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| ||||| || ||| ||||| | || ||||| ||||| || |||||||| Sbjct 4310965 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 4310906 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| ||||||||| | || | ||||||||||| | || || || || || || Sbjct 4310905 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCAC--ATTCT 4310848 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | || ||||| || || | ||| |||||||| || || |||||||| || | Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 4310787 AGATCTGCAT 4310778 >seq281 Length=276453 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 | ||||||||||| ||||| || ||| |||| | || ||||| ||||| || ||||||| Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 | ||||| ||||||||| | || | ||||||||||| Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 164638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325642245963584