Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 179 7e-40 >seq2 Length=39772498 Score = 179 bits (198), Expect = 7e-40 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || ||||| ||||||||||| || || || || || || |||| || Sbjct 4313285 CGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGTTCTTCCA 4313226 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| || ||||| |||||||| |||||||||||||||||||||||||| Sbjct 4313225 TCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTG 4313166 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || ||||||||||| || || |||||| | ||||||||||| || || Sbjct 4313165 TCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAGTGTAATG 4313106 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||||| || || || |||||| Sbjct 4313105 GTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 116 bits (128), Expect = 7e-21 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 |||||||| |||||||||||||||||||||||||| || || || || ||||||||||| Sbjct 4312254 ATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTC 4312195 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || |||||| | |||||| |||| || || ||||| || || | || || || Sbjct 4312194 TCGATTGTATCAGACGCTTCTACCTCCAGTGTAATGGTCTTACCAGTGAGAGTYTTGACR 4312135 Query 82800 AATATCTGCATT 82811 || || |||||| Sbjct 4312134 AAGATTTGCATT 4312123 Score = 114 bits (126), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || || || || || || | | |||||||| || || || ||||| |||| Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||| || || ||||| || ||||| ||||| || |||||||| || || ||||| | Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || || || | || || || | || || ||||||||||||| ||||| || | Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 4310787 AGATCTGCAT 4310778 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || || || || | | |||||||| || || || ||||| ||||| Sbjct 2636745 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 2636804 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 |||| || || ||||| || ||||| ||||| || |||||||| || || ||||| || Sbjct 2636805 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCG 2636864 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || | || || || | || || ||||||||||||| ||||| || || Sbjct 2636865 ATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 2636924 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 2636925 ATCTGCAT 2636932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981666985437504