Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq2 91.5 1e-13 >seq4 Length=10813142 Score = 105 bits (116), Expect = 6e-18 Identities = 474/747 (63%), Gaps = 9/747 (1%) Strand=Plus/Minus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAA 146948 || || || ||||| ||||| || | || || | || ||| || | ||| | ||| | Sbjct 9996317 TGGTTCACGACTTGGAACTCTCCTGATAGTACCCTTC-GAGTGTAGATATTCGTGGTGTA 9996259 Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008 |||||||| || ||||| || || | ||| || || || | || |||||||| || Sbjct 9996258 TGGCTCAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGC 9996199 Query 147009 CACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 | | | || |||| || ||| | ||| || || | || | || ||| || Sbjct 9996198 AAGAAGAAGAGAGTTTCTCACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATC 9996139 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128 ||||| | | || ||||| ||||||||||||||| || | || ||| | || Sbjct 9996138 CCACAAAGMAGTAGGAGTCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGG 9996079 Query 147129 ACTGCCAGCGAACGTAGTGTA--GCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 || || | |||| ||| || | || | |||| | ||||| || ||||| Sbjct 9996078 ACATCCTTCATACGTCTCGTATGGCCCCAGTTTCTCTGCA--AGCTCACAACTAGCCTCC 9996021 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 | || || ||||| |||||||| ||||| || | | | | || || Sbjct 9996020 AATGCCCCGTAGTAAATGGTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTG 9995961 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| |||| | |||| || | ||||||||||||| ||| ||||| |||| ||| || Sbjct 9995960 TCGAAAGGAAGCCGCATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATG 9995901 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATA 147366 ||||| ||| | |||| | | || || || | ||||||| ||| ||| || Sbjct 9995900 GGTCGGTGCCTCATGTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATG 9995841 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAA 147426 |||||||| || || | | || | ||| | || | || || || | ||||| ||| Sbjct 9995840 ATCTTGTTCAGATTCCTCGTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAA 9995781 Query 147427 GTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 | || || | | || | ||| ||||| || || |||| || || || || Sbjct 9995780 G---AGTTGTCCAAATTAACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCA 9995724 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 |||| || | ||| || | ||| || || | ||| || ||||| || || || | Sbjct 9995723 ATCTCATCAGGTGAGCTATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTT 9995664 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 || | ||| ||||| ||| |||| || || || || || | |||||||| ||| Sbjct 9995663 CCAAGATTCTGCTGGTTGGACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTC 9995604 Query 147607 CCGGTCTCGACTTGCGTTTCAACGATA 147633 || || || || || | || | |||| Sbjct 9995603 CCTGTTTCTACCTGGGACTCRATGATA 9995577 >seq2 Length=39772498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| ||| | |||| ||||| || ||||||||||| | || Sbjct 4313292 ACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGT 4313233 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | ||| || || ||||| |||| | | ||||| | |||||||||||||||||| || Sbjct 4313232 TCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCC 4313173 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| ||| | | || | ||||| | || || ||||| | Sbjct 4313172 TTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAG 4313113 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || ||||| || | ||| || ||||| Sbjct 4313112 TGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCAT 4313071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 131924 ATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTA 131983 |||| | || |||| ||||||||||||||| | ||| ||| ||||| ||||| || Sbjct 4310976 ATGTCTCAC-CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTG 4310918 Query 131984 CCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGT 132043 || | |||| || ||||| || ||||| || || || || || || ||| || Sbjct 4310917 CCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCC 4310858 Query 132044 TTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGA 132103 |||| | || | ||| |||| || |||||| |||| || | || || || ||||| Sbjct 4310857 TTCACATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGG 4310798 Query 132104 GTTTTTATGAAAATCTGCAT 132123 || || | ||| |||||||| Sbjct 4310797 GTCTTCACGAAGATCTGCAT 4310778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476535323496960