Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 125 7e-24 seq2 111 2e-19 seq7 100 3e-16 >seq4 Length=10813142 Score = 125 bits (138), Expect = 7e-24 Identities = 523/819 (64%), Gaps = 8/819 (1%) Strand=Plus/Plus Query 8500 ATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGA 8559 ||||| |||| ||||| ||||| | | ||||| | || |||||| | ||| || Sbjct 9995839 ATCATAGATGCCAATTACTATCCAGTTGCTGAAGCCAAACTCTCCAACATGAGGCACCGA 9995898 Query 8560 CCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTAC 8619 ||| ||||| | || | |||||||||||||| || || | | |||| || || | | Sbjct 9995899 CCCATTGGCATCGGAATCCAAGGTCTGGCCGATGCCTTCATCCTAATGCGGCTTCCTTTC 9995958 Query 8620 GAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCA 8679 || || | | | |||| | || |||| ||||| | || ||||| ||| Sbjct 9995959 GACAGTGAGGGTTCACGCAAATTGAATGCTCAAATTTTTGAAACCATTTACTACGGGGCA 9996018 Query 8680 TTAGAAGCCAGCTGTCAACTTGCCCGAGAAT-TGGGCACGTACGAATCGTACGCGGGCAG 8738 || || || || ||| | ||||| ||||| |||| | ||||| |||| | || | Sbjct 9996019 TTGGAGGCTAGTTGTGAGCTTGCA-GAGAAACTGGGGCCATACGAGACGTATGAAGGATG 9996077 Query 8739 CCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTG 8798 || | || || || | || |||||||||||| ||| || || || ||||||| Sbjct 9996078 TCCAGTTAGTAAGGGTATTCTTCAGTACGACATGTGGGGTGTGACTCCTACTKCTTTGTG 9996137 Query 8799 GAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGT 8858 | ||||| | | | |||| ||||||||| | ||| || | || || || | | Sbjct 9996138 GGATTGGGCGGCTCTAAAACAAAAAATTGCTGCACATGGTGTGAGAAACTCTCTTCTTCT 9996197 Query 8859 GGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCC 8918 || ||||| || || | ||||| || ||| | |||||||| |||||||||||||| Sbjct 9996198 TGCACCTATGCCTACAGCTTCTACTGCACAGATACTCGGAAACAATGAATCCTTTGAGCC 9996257 Query 8919 GTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCG 8978 | ||||| || | ||| || | || | | || || || | | |||| | Sbjct 9996258 ATACACCACGAATATCTACACTCGAAGGGTACTATCAGGAGAGTTCCAAGTCGTGAACCA 9996317 Query 8979 TCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACA---AAATGCGCGATGC 9035 ||| || | | || | | || ||| | |||| | |||| ||||| | | Sbjct 9996318 TCACCTGCTAAGGGATCTCACCG-AGCTTG-GTTTGTG-GGACAGTGAAATGAAAAACAC 9996374 Query 9036 CATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGA 9095 || || || ||| || | | || ||||| ||| | || | |||| || | Sbjct 9996375 AATACTGAAAAACAAAGGGTCCATCCAAAACATAGACAGAATCCCGGAGGACATAAAGGC 9996434 Query 9096 GCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAG 9155 |||||||| ||||||||||| || || | || | || ||||| || ||| | Sbjct 9996435 TCTGTATAAGACCGTTTGGGAGATTTCTCAGAAGGCGATACTCCAGATGGCCGCAGATCG 9996494 Query 9156 AGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGC 9215 || || || |||||||| || || || | ||| | | | || | |||| || | Sbjct 9996495 TGGTGCATTCATTGATCAAAGCCAGTCACTCAACATCCACATTGCTGAGCCAAATTTTGG 9996554 Query 9216 TTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTA 9275 | | | | || |||| | ||||||| |||| ||||||| || ||||| || Sbjct 9996555 TAAGCTCACATCTATGCATTTCTACGGTTGGAAATTGGGCCTAAAAACGGGGATGTATTA 9996614 Query 9276 TTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTAC 9314 | |||| ||||| || || ||||| || || ||||||| Sbjct 9996615 TCTGCGGACAAAGCCAGCAGCTGATCCCATTCAATTTAC 9996653 >seq2 Length=39772498 Score = 111 bits (122), Expect = 2e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || ||||| || || ||||||||||| || || || || Sbjct 4313279 ACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGTTCTTCCATCCTCA 4313220 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || |||||||| ||||| || | | ||| ||||| || ||||| ||||| || || || Sbjct 4313219 AGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGG 4313160 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||| || || | ||| || |||| ||| || || || |||||||| ||| Sbjct 4313159 ATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAGTGTAATGGTCTTA 4313100 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| | ||| || ||||| ||||||||| Sbjct 4313099 CCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | |||| | ||| || ||||| ||||| || || | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | |||||||| || || || || || || || || ||||| || || || | Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 2636862 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| |||| ||||| ||||| || ||||| || || || | || || |||| Sbjct 2636863 CGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 2636922 Query 134704 AAATTTGCAT 134713 | || ||||| Sbjct 2636923 AGATCTGCAT 2636932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 134524 CCTTT-TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| ||||||||||||||| | |||| | ||| || ||||| ||||| || || Sbjct 4310968 CCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 4310909 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 || | |||||||| || || || || || || || || ||||| || || || Sbjct 4310908 ATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTC 4310849 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | ||||||| || ||||| ||||| || ||||| || || || | || || ||| Sbjct 4310848 TCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 4310789 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 4310788 AAGATCTGCAT 4310778 >seq7 Length=109384913 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 |||| || || || || | ||| |||||||| ||||| || ||||| | |||||| |||| Sbjct 105115005 CCTCATCTCGGGAGATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTT 105115064 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACA 21852 | | |||||||||| ||||||||||| |||||||| | |||||| ||| Sbjct 105115065 TCAACCAAAAAATTGCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACA 105115114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505317940574720