Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 334 1e-86 seq7 161 1e-34 >seq4 Length=10813142 Score = 334 bits (370), Expect = 1e-86 Identities = 734/1096 (67%), Gaps = 10/1096 (1%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 |||||| ||||| |||||||| | ||| || ||||| || ||||| ||||| || || Sbjct 9996660 ATCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 ||| || || | |||| ||||||||||||||| ||| || || | || |||| || Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 || || || || || | || || |||||||| ||||| || || | |||||| ||||| Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | | || ||| |||| ||| ||||||| |||||| | | || || || || Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421 Query 68607 TGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 || | || | ||||| ||||| || | | ||| | || || || || Sbjct 9996420 CGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC 9996361 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 | | |||||| ||| || | | | || || || || | || || | ||| || Sbjct 9996360 ACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAA 9996301 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || || |||| || || |||||||| ||||| |||| ||||| || | |||||||| Sbjct 9996300 CTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATT 9996241 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||||| || || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996240 GTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCT 9996181 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTAC 68903 | |||||||| ||||| | ||||||| ||||||||| | | || || Sbjct 9996180 CACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGT 9996121 Query 68904 AACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTC 68963 ||| ||| | ||||| || ||||| || ||||| | |||| | ||| || || Sbjct 9996120 CACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTC 9996061 Query 68964 ATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGT 69023 || || || | || || || |||||||| ||||| ||||| ||||| ||||| || Sbjct 9996060 GTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGT 9996001 Query 69024 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG 69083 ||| ||||| | ||| | | ||| | ||| ||||| ||| | | || Sbjct 9996000 TTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATTAG 9995941 Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 || || ||||| |||| || || | || || || || |||| || ||| | || || Sbjct 9995940 GATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGA 9995881 Query 69144 ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 || ||||| | || ||||| ||||| |||||| || || || ||||| | Sbjct 9995880 GAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGT 9995821 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC----AAATCGTCCATCTATAACAA 69259 |||| ||| |||| |||||| |||| |||||| | | ||||| | |||||| Sbjct 9995820 CACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAACAA 9995762 Query 69260 ACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC-ATAT 69318 |||| || | || | || || | ||||| || || | ||||| || | || |||| Sbjct 9995761 ACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAG-GTGAGCTATAT 9995703 Query 69319 TGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTC 69378 | | |||||||| |||||||| ||||| ||||| || || ||||| ||||| || | Sbjct 9995702 TCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGAC 9995643 Query 69379 TTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCG 69438 || ||||||| || ||||| ||||| || | || || || ||||| | ||| || || Sbjct 9995642 TTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCR 9995583 Query 69439 ATAATAGATTTCCAAA 69454 || |||| | ||||| Sbjct 9995582 ATGATAGCGTGCCAAA 9995567 >seq7 Length=109384913 Score = 161 bits (178), Expect = 1e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 |||| |||| || || ||||||||||| || | |||||||||||||||||||| |||| Sbjct 105116682 TTTCTGCACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGT 105116741 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 | || || || || ||||| || ||||| || || ||||| || | ||| || ||| || Sbjct 105116742 TCTCGATGGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGAC 105116801 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||||||| | | |||||||| || || |||||| || ||||| ||||| | | Sbjct 105116802 TGAATCTTTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGA 105116861 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||||| || |||||| | ||||| || ||| || ||||| Sbjct 105116862 CATGTTTGATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCA 105116904 Score = 123 bits (136), Expect = 3e-23 Identities = 151/203 (74%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 |||||||| || ||||| ||||| |||||||| | |||||| || |||||||| ||| Sbjct 105115034 AATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATTGCAGCAAAGCTACCA 105115093 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||| |||||||| || || ||||||||||||| | | |||||| | ||| || Sbjct 105115094 GAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCTCCGAA---TGTGGCA 105115150 Query 39788 TTAT------GTATCCACTTCT-GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | | ||||| |||| |||||||| || |||||||| ||||| ||||| || Sbjct 105115151 GTCTCGGAGCTGATCCA-TTCTAAGGCCCAATCTGCCTTCTTCTTCACACATGGCATGGT 105115209 Query 39841 TTCTATAGCATTAAAGAGATAAT 39863 ||| || ||||| || || |||| Sbjct 105115210 TTCAATTGCATTGAAAAGGTAAT 105115232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686799444119040