Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq7 89.7 6e-13 >seq4 Length=10813142 Score = 145 bits (160), Expect = 1e-29 Identities = 694/1079 (64%), Gaps = 33/1079 (3%) Strand=Plus/Minus Query 110356 CTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCAT 110415 ||||| || ||||| |||||||| || || || || |||||| |||| | |||||| Sbjct 9996627 CTTTGTCCGCAGATAATACATCCCCGTTTTTAGGCCCAATTTCCAACCGTAGAAATGCAT 9996568 Query 110416 AGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTC 110475 ||| | |||||| | |||| | ||| || ||| | || ||||| || Sbjct 9996567 AGATGTGAGCTTACCAAAATTTGGCTCAGCAATGTGGATGTTGAGTGACTGGCTTTGATC 9996508 Query 110476 AATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAAC 110535 |||||| || || | ||| ||||| | | | ||||| ||| |||||||| Sbjct 9996507 AATGAATGCACCACGATCTGCGGCCATCTGGAGTATCGCCTTCTGAGAAATCTCCCAAAC 9996448 Query 110536 TGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAG-ATATTCTGGATGGAACCCC 110594 || ||| ||| ||| || || || ||||| |||| || || |||||||| || Sbjct 9996447 GGTCTTATACAGAGCCTTTATGTCCTCCGGGAT-TCTGTCTATGTTTTGGATGGACCCTT 9996389 Query 110595 CCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCAT 110654 |||| || | ||||| || || ||| | ||||| || |||| || Sbjct 9996388 TGTTTTTCAGTATTGTGTTTTTCATTTCACTGTCCCACAAACCAAGCTCGGTGAGATCCC 9996329 Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 | | ||||| | ||| || | ||||| |||| || |||| |||||| | Sbjct 9996328 TTAGCAGGTGATGGTTCACGACTTGGAACTCTCCTGATAGTACCCTTCGAGTGTAGATAT 9996269 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTG 110774 | || |||||||| |||||| ||||||| || || | || ||||| || || ||||| | Sbjct 9996268 TCGTGGTGTATGGCTCAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAG 9996209 Query 110775 GCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAA 110834 |||| ||||| | | |||| ||| | | ||| | | || || || ||| Sbjct 9996208 GCATAGGTGCAAGAAGAAGAGAGTTTCTCACACCATGTGCAGCAATTTTTTGTTTTAGAG 9996149 Query 110835 CATCCCAGTCGTAGTT-GAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCC 110892 | |||| || | | | || |||| |||||||||| ||||||| | ||| Sbjct 9996148 CCGCCCAATCCCACAAAGMAGTAGGAGTCACAC-CCCACATGTCGTACTGAAGAATACCC 9996090 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952 || | | ||| | || ||| | || || || | || | || || | ||||| Sbjct 9996089 TTACTAA-CTGGACATCCTTCATACGTCTCGTATGGCCCCAGTTTCTCTGCAAGCTCACA 9996031 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-TCTCCTTGG 111011 || ||||||| | ||| || ||||||||||| || ||||||||| | | | || Sbjct 9996030 ACTAGCCTCCAATGCCCCGTAGTAAATGGTTTCAAAAATTTGAGCATTCAATTTGCGTGA 9995971 Query 111012 --CTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAA 111068 | ||| ||| || || | | ||| ||| | || || |||| || |||||||| | Sbjct 9995970 ACCCTCA-CTG--TCGAAAG-GAAGCCGCATTAGGATGAAGGCATCGGCCAGACCTTGGA 9995915 Query 111069 CACCCAAACCAATAGGTCTGTGTCGCATATT--AGACTTTCGCG-CAGTCTCAACGGGAT 111125 || | ||||| |||| ||| | ||| || ||| ||| || ||| |||| |||| Sbjct 9995914 TTCCGATGCCAATGGGTCGGTGCCTCATGTTGGAGAGTTTGGCTTCAG---CAACTGGAT 9995858 Query 111126 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT---TTCAT 111182 | |||| || |||| ||| ||||| | || || | |||| ||| ||| | Sbjct 9995857 AGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGTCACTAG-TTTG-GATACGTTCTT 9995800 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 | | || || |||| ||| | | || ||| ||| || | | ||| || | Sbjct 9995799 TA-GCTTGACAAAATCGTAAGAGT---TGTCCAAATTAACAAACATGTTGACGGCAATCG 9995744 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCC--TTATCTGTGTACTCTAAAATTTCTGTACA 111300 | ||||| || || ||||| ||||||| | | || | | || | ||| ||||| || Sbjct 9995743 AGGCCAAGTTACACACAGCAATCTCATCAGGTGAGCTATAT--TCCACAATCTCTGTGCA 9995686 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 || ||| || ||| ||||| || | ||||| ||||| |||| |||| || ||||| Sbjct 9995685 TAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGACTTCCTGTTACATGCATC 9995626 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||| || ||||||||||| ||||| || || ||| || | | ||||| | ||||| Sbjct 9995625 CTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCRATGATAGCGTGCCAAA 9995567 >seq7 Length=109384913 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||||||| || |||||||| ||| || |||||||| ||||| ||||| | Sbjct 105115005 CCTCATCTCGGGAGATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTT 105115064 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||||||| |||| || ||| || || || || ||||| ||||| ||| ||||| Sbjct 105115065 TCAACCAAAAAATTGCAGCA-AAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAAT 105115123 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| | ||||| |||| | | || || | | ||||| | ||||| | Sbjct 105115124 GCAATTATCCGTTCTCCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCT 105115183 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTT 122884 |||||||||| | |||||| | |||| Sbjct 105115184 GCCTTCTTCTTCACACATGGCATGGTTT 105115211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627932017305600