Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6775 105 8e-18 seq7 87.8 2e-12 >seq6775 Length=4736 Score = 105 bits (116), Expect = 8e-18 Identities = 279/419 (67%), Gaps = 19/419 (5%) Strand=Plus/Plus Query 9604 TTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 ||||||| || |||||||||||||| || | ||||| | |||||||||| ||| Sbjct 1334 TTCATTAGACTCGAAACCATCCATCTCAACCAGTAACTGGTTTAATGTTTGTTCCCTTTC 1393 Query 9661 ATCATTCGCTGGCA-TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9719 || || | | || | |||| | ||| ||| | ||||| ||||| || || || | Sbjct 1394 GTCGTT-ACCGCCACCAAGACCAATGCCGCGATGCCTACCCACTGCATCTATTTCGTCTA 1452 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGC---GACTTCAAAGAGATCCCGTACACGCT 9776 |||| | || || || ||||| | || || ||||| | |||||| ||||| Sbjct 1453 TGAAAATTATACAAGGAGCATTTT-TCTTGCCTTGA--TCAAACATATCCCGGACACGGC 1509 Query 9777 TGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGA 9836 | || || ||||| |||||||| || || || | | | ||| | || || | Sbjct 1510 TTGCACCAACACCGACAAACATTTCAACGAAATCAGATCCAGAAATACTAAAAAACGGTA 1569 Query 9837 CATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG 9896 |||||| |||||| ||||| || || || || ||||| ||||| || || || ||| Sbjct 1570 CATTAGCTTCACCTGCAATTGCACGAGCAAGTAGAGTTTTACCAGTTCCAGGGGAACCAA 1629 Query 9897 CGAGGAGGGCACCTCGTGGAATCTTGGCGC----CACTTCCAAAGTATCTCTCAGGTTGC 9952 | || ||| ||| ||||| | | ||||| || | | || ||| Sbjct 1630 TTAAAAGACATCCTTTTGGTATCTTTCCACCTAACACTTGAAATTTTTGCCT----TTGT 1685 Query 9953 TTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||||||||||| |||||||| |||| || ||||| || | |||||||| ||||||| Sbjct 1686 TTAAGAAAATCAACAATTTCAACCAACTCTTCTTTTGCTTCATCAATCCCAGCAACATC 1744 >seq7 Length=109384913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 |||||||| ||||||||| ||||| || |||||| ||| ||| || |||| |||| | Sbjct 105115125 GCATTTGCAGCTGTTGAGGGCATCTTTTTTTCTGGTAGCTT-TGCTGCAATTTTTTGGTT 105115067 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 || ||||||||||| |||||||| ||| ||| ||| || || ||||| || || || Sbjct 105115066 GAAAAAGCGAGGTCTTATGCCAGGCCTCACATTCAGCAATGAACTCATCTCCCGAGATGA 105115007 Query 94935 GG 94936 || Sbjct 105115006 GG 105115005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583167944880640