Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 113 5e-20 seq3 84.2 2e-11 >seq7 Length=109384913 Score = 113 bits (124), Expect = 5e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||||||||||||| |||| ||| |||||||||||||| ||| || || || || || | Sbjct 99021591 GAGTGAAAATGTATCGAGGGCTAGCAGCATCCTTGCCTCCAATGAGTCGAGTGCCAAACT 99021650 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| || ||||| | |||||| || ||||| || || |||||||||| Sbjct 99021651 GACCAATAGGCTGTAACAGGTTGATATTGTTGCTCCCGACAAAATTCTGGGCCAAGTTGA 99021710 Query 117423 CAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 || || || | ||| | |||||| ||||| || || | ||||| || ||| | Sbjct 99021711 TTATGGTGGACATGAGAGATT--GCTCACCGTGGTGGTAGGCTGAATGCTCGGCTACGGA 99021768 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| || ||||| || || ||| Sbjct 99021769 CCCAGCCAGTTGGGCCACTTTGATYTCT 99021796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| |||||||| | ||| || ||||||||||| || || || || |||||||| Sbjct 99021593 GTGAAAATGTATCGAGGGCTAGCAGCATCCTTGCCTCCAATGAGTCGAGTGCCAAACTGA 99021652 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | ||||||| |||||| || || |||||||| ||||| || | Sbjct 99021653 CCAATAGGCTGTAACAGGTTGATATTGTTGCTCCCGACAAAATTCTGGGCCAAGTTGATT 99021712 Query 152149 ATCGTGCCCTGCAGA-CTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || ||| | ||| | || ||||||||||| || || | ||||| || | | | || Sbjct 99021713 ATGGTGGACATGAGAGATTGC-TCACCGTGGTGGTAGGCTGAATGCTCGGCTACGGACCC 99021771 Query 152208 CGCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 |||| || ||||| || || || || | |||| ||| | || ||||| | ||| || Sbjct 99021772 AGCCAGTTGGGCCACTTTGATYTCTCGTTTGTCA-TTTCGT-TTTAGACATGTGTACATT 99021829 Query 152266 ACCT 152269 |||| Sbjct 99021830 ACCT 99021833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118157 ACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCA 118216 ||||||||| | |||| |||| ||| || || | || ||||| ||||||||||||||| Sbjct 99033444 ACCTGTTTTTTACTGGCCTCCCTAACATTTAGCAGTTTGCCCCGAAGTGGAAACACGCCA 99033503 Query 118217 AACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCC 118276 | ||||| | || || |||| | ||| | | ||| | | || |||||||| ||| Sbjct 99033504 TATTTGTCCCTTCCTACTACGCCGAGGCCAGATACAGCCAAAGATTTGGCCGAGTCCCCC 99033563 Query 118277 TCGGTAATAATAAGAGTGCACTC 118299 ||||||| ||||| ||||| || Sbjct 99033564 TCGGTAAGGATAAGGGTGCAGTC 99033586 >seq3 Length=34716904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAA 124545 |||| | |||||| || | ||||||||||||||||||| ||||||| || || ||||| Sbjct 17808186 CCTCTACAAACTCTCGCACGCTGTGCGTCTCACCCGTGGCAATCACAAAGTCCTCGGGCT 17808245 Query 124546 TCGACTGCTGCAACATAAGCCACATGGCTTG 124576 |||||||| | ||| |||||||| || || Sbjct 17808246 CTGACTGCTGTAGCATCAGCCACATCGCCTG 17808276 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 |||||| || | |||||||||||| || || ||||||||||||||||| || | | ||| Sbjct 17808193 AAACTCTCGCACGCTGTGCGTCTCACCCGTGGCAATCACAAAGTCCTCGGGCTCTGACTG 17808252 Query 159003 TTGGAGCATGAGCCACATGGCCT 159025 || ||||| |||||||| |||| Sbjct 17808253 CTGTAGCATCAGCCACATCGCCT 17808275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547128883212800