Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 seq281 100 3e-16 seq7 100 3e-16 seq4 96.9 4e-15 >seq2 Length=39772498 Score = 174 bits (192), Expect = 2e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| || ||||| ||||| ||||| || || || || | Sbjct 4313070 AATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTC 4313129 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || |||||||| ||||||||||| ||||| |||||||| || Sbjct 4313130 TGATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCA 4313189 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | ||||| ||||| || || ||||| ||||||| | || || ||||||| || Sbjct 4313190 ACAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAA 4313249 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||||||||| || | || ||||| ||||| Sbjct 4313250 CATCCAGAAAGAATCAACTCTTCATCTGGTTCTTCGCCTTCGTGGTGG 4313297 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || |||||||||||||||||||| || ||||||||| Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAG 2636813 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || || | || ||||| | ||||| || Sbjct 2636812 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2636753 Query 27586 GTCCAAAAGG 27595 | || |||| Sbjct 2636752 ATTCAGAAGG 2636743 Score = 131 bits (144), Expect = 2e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || ||||| |||||||||||||| || ||||||||| Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAG 4310897 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || || ||||| ||||| || || || | || ||||| | ||||| || Sbjct 4310898 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 4310956 Score = 107 bits (118), Expect = 2e-18 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| ||||| || || || || ||||| ||||| || ||||| || | Sbjct 4312123 AATGCAAATCTTYGTCAARACTCTCACTGGTAAGACCATTACACTGGAGGTAGAAGCGTC 4312182 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || |||||||| ||||||||||| ||||| |||||||| || Sbjct 4312183 TGATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCA 4312242 Query 27525 GCAGCGTCTAAT 27536 ||| | ||||| Sbjct 4312243 ACAGAGACTAAT 4312254 >seq281 Length=276453 Score = 100 bits (110), Expect = 3e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||||| || |||||||||||||||||||| || |||||||||||||| || || Sbjct 164617 AATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGACTCATC 164676 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| || || || | || ||||| | ||||| || Sbjct 164677 TTCGCTGGCAAGCAGCTGGAAGACGGKCGCACCCTCTCCGACTACAA 164723 >seq7 Length=109384913 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || || ||||| || ||| | || | ||| || ||||| | ||||| |||||||| Sbjct 99021795 GARATCAAAGTGGCCCAACTGGCTGGGTCCGTAGCCGAGCATTCAGCCTACCACCACGGT 99021736 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 ||| || ||| | |||||| ||||| | || ||||| |||||||| || || Sbjct 99021735 GAGCAATCTCTCATGTCCACCATAATCAACTTGGCCCAGAATTTTGTCGGGAGCAACAAT 99021676 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 | ||| | | |||| ||| |||||||| || || ||| || |||||||||||| Sbjct 99021675 ATCAACCTGTTACAGCCTATTGGTCAGTTTGGCACTCGACTCATTGGAGGCAAGGATGCT 99021616 Query 32227 GCGAGCTCCCGTTACATCTTCAC 32249 || ||| | || ||||| ||||| Sbjct 99021615 GCTAGCCCTCGATACATTTTCAC 99021593 >seq4 Length=10813142 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/432 (66%), Gaps = 23/432 (5%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 ||||||||||| ||||| ||||| || |||||| ||||| ||||| | |||||||| Sbjct 9996623 GTCCGCAGATAATACATCCCCGTTTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGAT 9996564 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| ||| | || | | ||| |||||| || ||||| ||| ||| Sbjct 9996563 GTGAGCTTACCAAAATTTGGCTCAGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATG 9996504 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || ||||||||||| ||||| | | || | ||| || | ||| ||||| || || Sbjct 9996503 AATGCACCACGATCTGCGGCCATCTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTC 9996444 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAA---TGTCCAGATTTTGCACACTGCCACCG 80271 ||||| |||| | ||||| || | |||| | ||||| | || | Sbjct 9996443 TTATACAGAGCCTT---TATGTCCTCCGGGATTCTGTCTATGTTTTGGATGGACCCTTTG 9996387 Query 80272 TCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTC 80331 | || | ||| ||||||| |||| ||| | |||||||| | ||||| | Sbjct 9996386 TTTTTCAGTATTGTGTTTTTCATTTCACTGTCCCACAAACCAAGCTCGGTGAGATCCCTT 9996327 Query 80332 ACAAGGTGCTTGTTAATCATGAC---AAACTCTCCCGCGAG---GGTGCGA-CGCAGATA 80384 | ||||| | || ||| ||| |||||||| | || | ||| | ||||| Sbjct 9996326 AGCAGGTGATGGT---TCACGACTTGGAACTCTCCTGATAGTACCCTTCGAGTGTAGATA 9996270 Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444 || || ||||| |||||||| | || ||||||||||| ||||| || || || Sbjct 9996269 ----TTCGTGGTGTATGGCTCAAAGGATTCATTGTTTCCGAGTATCTGTGCAGTAGAAGC 9996214 Query 80445 CGTCGGCATCGG 80456 || ||||| || Sbjct 9996213 TGTAGGCATAGG 9996202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570219606584320