Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 >seq2 Length=39772498 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| ||| | ||||| || ||||| ||| |||| Sbjct 4313071 ATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCT 4313130 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 4313131 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4313190 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||| | |||||||||||| | || || | || |||| || |||||| Sbjct 4313191 CAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAAC 4313250 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || || | ||| ||||| | || | || ||||| Sbjct 4313251 ATCCAGAAAGAATCAACTCTTCATCTGGTTCTTCGCCTTCGTGGTGG 4313297 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| |||| Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || ||||| ||||| || || || || || || || Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAG 2636813 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || |||||||| | ||| | ||||| |||||| Sbjct 2636812 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2636753 Query 27168 ATTCAAAAG---GAGTCGACCTT---ACATTTGGTTTTGCGTTTGCGGG 27210 ||||| ||| ||| | || || ||||||| |||| |||| ||| Sbjct 2636752 ATTCAGAAGGGTGAGACAACTTTCCGACATTTG---TTGCTTTTGGGGG 2636707 Score = 104 bits (114), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| || || Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || ||||| ||||| || || || || || || || Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAG 4310897 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || |||||||| | ||| | ||||| |||||| Sbjct 4310898 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 4310957 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 4310958 ATTCAGAAAGG 4310968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434849160990720