Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-23 seq8353 104 6e-17 seq281 100 7e-16 seq129 98.7 2e-15 seq5 95.1 3e-14 seq5425 91.5 4e-13 seq221 91.5 4e-13 seq4487 89.7 1e-12 seq124 89.7 1e-12 >seq2 Length=39772498 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| | || | ||| ||||| |||||||| ||||||||||| ||||| || Sbjct 2636754 TTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATGAGTCGCTGC 2636813 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || || || || |||||||| || ||||| ||||||| ||||| |||||| Sbjct 2636814 TGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATAGTGTCT 2636873 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||||| || | ||||| |||||||| |||| || || | ||| | ||||| Sbjct 2636874 GACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 2636932 Score = 120 bits (132), Expect = 7e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | ||||| |||| | || | ||| ||||| |||||||| |||||||||| Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | ||||| || ||||| || || || || |||||||| || ||||| ||||||| | Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| ||||| | | ||||| || | ||||| |||||||| |||| || || | || Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 4310787 AGATCTGCAT 4310778 Score = 114 bits (126), Expect = 3e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||| |||||||| |||| ||||| || | | || Sbjct 4313292 ACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGT 4313233 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || || || || || || || |||| ||||| || || || || || Sbjct 4313232 TCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCC 4313173 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| ||||| ||| || || ||| ||||| || || || | ||| || || | Sbjct 4313172 TTCCTTGTCCTGGAT-TTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCA 4313114 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| || | ||| | ||||||| Sbjct 4313113 GTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 >seq8353 Length=1797 Score = 104 bits (114), Expect = 6e-17 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 7570 ATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGT 7629 ||||| || |||||||| |||| ||||||||| | || || || || | || || || Sbjct 1413 ATTACAGCACATGCCTTCATTATAATTTTCTTTATAGTAATACCAATTTTAATTGGAGGA 1354 Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 || ||||| ||| | || |||||||| |||| || ||||| ||||| || || | | Sbjct 1353 TTTGGAAACTGACTAGTCCCTTTAATACTTGGAGCACCTGACATGGCCTTCCCCCGAATA 1294 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCTTC-CTTA 7725 || |||||||| || ||| | ||||||||||| |||| Sbjct 1293 AATAATATAAGATTCTGACTTCTACCGCCTTCACTTA 1257 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||| |||||||| | ||| ||||| || || || | Sbjct 859 TTCAGGATGACCAAAAAATCAAAATAAGTGTTGATATAAGATTGGATCTCCACCTCCAGC 918 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTC 370760 ||||||||||| ||||||| |||| Sbjct 919 GGGATCAAAAAATGATGTATTAAGGTTTC 947 >seq281 Length=276453 Score = 100 bits (110), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| | || | || ||||| |||||||| ||||||||||| ||||| || Sbjct 164723 TTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGATGAGTCGCTGC 164664 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || || || || |||||||| || ||||| ||||||| ||||| |||||| Sbjct 164663 TGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATAGTGTCT 164604 Query 225655 GAGGTTTCCACGTC 225668 || | ||||| || Sbjct 164603 GACGCCTCCACCTC 164590 >seq129 Length=450478 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || |||||| |||| || || || ||| |||| ||||||||| | || || Sbjct 443163 CAAATCTATAATGTTATTGTTACAGCWCACGCTTTTATTATAATTTTCTTTATAGTAATR 443222 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || | || || |||| || || ||||| |||||||||| | || || || ||| Sbjct 443223 CCTATTTTAATCGGTRGTTTTGGGAACTGATTAGTTCCTTTAAWATTAGGAGCACCCGAT 443282 Query 7672 ATGGCTTT-TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || ||||| || | | || |||||||| || ||| | || |||||||| Sbjct 443283 ATAGCTTTCCCCCCGAATAAATAATATAAGATTCTGACTTCTGCCGCCTTC 443333 >seq5 Length=36881487 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || |||||| ||| || ||| ||| |||| |||||||| | || || Sbjct 10699801 CAAATATATAATGTTATTGTTAGAGCACATTT-TTTATTATAATTTTCTTCATAGTAATA 10699743 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || | || || ||||| || || ||||| ||||||||||| | || | || ||| Sbjct 10699742 CCTATTCTTATTGGAGGTTTTGGGAACTGATTAGTTCCTTTAATATTAGGAGTGCCAGAT 10699683 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTT 7720 || |||||||| | | || |||||||| |||||| | |||| ||||| Sbjct 10699682 ATAGCTTTTCCCCGAATAAATAATATAAGATTTTGACTTCTACTGCCTT 10699634 >seq5425 Length=11313 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 7545 TAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTT 7604 |||| ||| || || ||||| || ||||| | |||||| | | ||| | || ||| | Sbjct 9902 TAATTACCAGCTATATAACGTAATGATTACAGGGCATGCGGTAATAATGGTGTTTTTTAT 9843 Query 7605 TGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGC 7664 | ||||| | | || || || || || ||||| ||||| ||| | ||||||||||| Sbjct 9842 GATAATGCCAGCCTTAATGGGAGGATTTGGTAATTGGTTCGTACCTCTCATGATTGGTGC 9783 Query 7665 TCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 || |||||||| ||||| | | || ||| |||||||||| || Sbjct 9782 ACCAGATATGGCATTTCCTCGTATGAATAATTTAAGTTTTTGGTT 9738 >seq221 Length=318192 Score = 91.5 bits (100), Expect = 4e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 7533 AATATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTAT 7592 ||| || | ||| || |||| |||| || || ||| |||| ||||| | |||||||| Sbjct 176022 AATTTTAATTGGGGATGACCAAATTTATAATGTAATTGTTACAGCGCACGAATTTGTTAT 175963 Query 7593 GATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTT 7652 || ||||| | || || || | | || || | ||| ||||||||||| | || || Sbjct 175962 AATCTTCTTCATGGTAATATCGATCCTAATTGGTGTTTTTGGAAATTGATTAATCCCATT 175903 Query 7653 AATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 ||| | || |||||| |||| ||||| || | | || |||||||| |||||| | | Sbjct 175902 AATACTAGGAGCTCCTAATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGACTTTT 175843 Query 7713 ACCGCCTTCCTTA 7725 | | || || ||| Sbjct 175842 ATCCCCATCATTA 175830 >seq4487 Length=19373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 13503 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 13444 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || |||| || |||||||||||||| Sbjct 13443 TAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGGTCTGAC 13395 >seq124 Length=437816 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 370678 ATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATC 370737 ||| ||||| ||||| ||||||||||||||||| |||||||| | | ||| || ||||| Sbjct 164610 ATGTCCAAATAATCAAAATAAATGTTGATAAAGAATAGGATCCACCCTGCCAGAAGGATC 164669 Query 370738 AAAA-AAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||| ||| | ||||| |||||| ||| ||||||| Sbjct 164670 AAAATAAGAT-GTATTTAAATTTTGATCGGTTAAAA 164704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192336602758784