Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 399 3e-106 seq7 114 2e-20 >seq4 Length=10813142 Score = 399 bits (442), Expect = 3e-106 Identities = 743/1087 (68%), Gaps = 10/1087 (1%) Strand=Plus/Minus Query 76775 ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 |||||| ||||| ||||| ||| || ||| || ||||| || ||||| ||||| || || Sbjct 9996660 ATCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601 Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894 |||||| |||| |||| |||||||||||||| ||| || || | || | || || Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541 Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || || || || || | ||||| |||||||| ||||| || || | ||| || ||||| Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481 Query 76955 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 77014 | | || | ||| |||| ||| ||||||| || || | | || || || || Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421 Query 77015 TGGAAG---GTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATC 77071 || | || | | ||||| ||||| || | | | ||||| || || || || Sbjct 9996420 CGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC 9996361 Query 77072 ATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAA 77131 | | |||||| ||| || | | | || || || ||| | || || | ||| || Sbjct 9996360 ACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAA 9996301 Query 77132 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 77191 ||||| || | ||| || |||||||| ||||| |||| ||||| || | |||||||| Sbjct 9996300 CTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATT 9996241 Query 77192 GTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 77251 |||||| | || || ||||||||||| || ||||||||||| | | | | ||||| Sbjct 9996240 GTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCT 9996181 Query 77252 GAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTAC 77311 | |||||||| ||||| | ||||||| ||||||||| | | | ||| Sbjct 9996180 CACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGT 9996121 Query 77312 AACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTC 77371 ||| |||| | ||||| || ||||| || |||||| | |||| | ||| || || Sbjct 9996120 CACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTC 9996061 Query 77372 ATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGT 77431 || || || | | || || || |||||||| || |||||||| ||||| ||||| || Sbjct 9996060 GTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGT 9996001 Query 77432 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG 77491 ||| ||||| | ||| | | ||| | ||| || || ||| | | || Sbjct 9996000 TTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATTAG 9995941 Query 77492 AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 || |||||||| || | || || | ||| || ||||| |||| || ||| | ||||| Sbjct 9995940 GATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGA 9995881 Query 77552 AATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAAC 77611 | ||| ||||| | || ||||| ||||| ||||| || || || ||||| || Sbjct 9995880 GAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGT 9995821 Query 77612 AACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC----AAATCTTCCATCTATAACAA 77667 |||| ||| |||| |||||| || | |||||| | | |||| | |||||| Sbjct 9995820 CACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAACAA 9995762 Query 77668 ACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC-ATAT 77726 ||||||| | || || || || | ||||| || || | ||||| || || || |||| Sbjct 9995761 ACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAG-GTGAGCTATAT 9995703 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 | | ||||| || |||||||| ||||| ||||| || || ||||| || |||||| | Sbjct 9995702 TCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGAC 9995643 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 || | || |||| ||||||||||| || | || ||||| ||||| | ||| || || Sbjct 9995642 TTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCR 9995583 Query 77847 ATAATAG 77853 || |||| Sbjct 9995582 ATGATAG 9995576 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || ||| || || ||||||||||| || || ||||| ||||| ||||| | Sbjct 9975116 CACCACTGAAGGTTTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAA 9975057 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | ||||||||| || |||| || || ||||| || |||| || || | | | Sbjct 9975056 GGACAGCATAATCTGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGT 9974997 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 | ||||| | |||||||| ||| ||||||||| |||||||||| Sbjct 9974996 CCAACTCGACGGTTGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949 >seq7 Length=109384913 Score = 114 bits (126), Expect = 2e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48399 CTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATT 48458 || || || || || ||||| || | |||||||||||||| || ||||| || || || Sbjct 105116690 CTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATG 105116749 Query 48459 GCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518 || || ||||| || ||||| || |||||||| || | || || || || |||| | Sbjct 105116750 GCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCTT 105116809 Query 48519 TCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTA 48578 || | | || ||||| || || |||||| || ||||| ||||||| |||||||| Sbjct 105116810 TCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTG 105116869 Query 48579 ATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || |||||| | || | | |||||| ||||| Sbjct 105116870 ATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCA 105116904 Score = 109 bits (120), Expect = 8e-19 Identities = 143/195 (73%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CC 48250 |||||||| || ||||| || || || ||||| | |||||| ||||| || |||| | || Sbjct 105115034 AATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATTGCAGC-AAAGCTACC 105115092 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT-- 48308 |||||| || ||||| || || || |||||||| | | | |||||| | |||| Sbjct 105115093 AGAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCTCCGAATGTGGCAGT 105115152 Query 48309 -TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 ||| | ||||| | |||||||| ||||||||||| ||||| ||||| ||||| Sbjct 105115153 CTCGGAGCTGATCCATTCTAAGGCCCAATCTGCCTTCTTCTTCACACATGGCATGGTTTC 105115212 Query 48368 TATAGCATTAAAGAG 48382 || ||||| || || Sbjct 105115213 AATTGCATTGAAAAG 105115227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||||| || |||||||| || ||||||||||| ||||| || ||||||||||| | | Sbjct 105117153 TTTGATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACATTTGC 105117212 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 || || ||| ||||| || ||||| | |||||| | |||||||||| Sbjct 105117213 CAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTT 105117261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694558208727040