Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 399 3e-106 seq7 147 3e-30 >seq4 Length=10813142 Score = 399 bits (442), Expect = 3e-106 Identities = 747/1092 (68%), Gaps = 20/1092 (2%) Strand=Plus/Minus Query 75370 ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGT 75429 |||||| || || ||||||||| | |||||| ||||| || ||||| ||||| || || Sbjct 9996660 ATCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGT 9996601 Query 75430 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATC 75489 |||||| |||| |||| |||||||||||||| ||| || || | || | || || Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541 Query 75490 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 75549 || || || || || | ||||| |||||||| ||||| || || | ||| || ||||| Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481 Query 75550 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 75609 | | || | ||| |||| ||| ||||||| || || | | || || || || Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421 Query 75610 TGGAAGATT-----TGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 || |||| | | ||||| ||||| || | | ||||| || || || Sbjct 9996420 CGG--GATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATT 9996363 Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724 ||| | |||||| |||||| | | | || || || ||| | || || | ||| Sbjct 9996362 TCACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGG 9996303 Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 || ||||| || | ||| ||||||||||| ||||| |||| ||||| || | |||||| Sbjct 9996302 AACTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCA 9996243 Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844 |||||||| | || || ||||| ||||| || ||||||||||| | | | | ||| Sbjct 9996242 TTGTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTT 9996183 Query 75845 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 || | |||||||| ||||| | ||||||| ||||||||| | | | || Sbjct 9996182 CTCACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGA 9996123 Query 75905 ACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTT 75964 ||| |||| | ||||| || ||||| || || ||| | |||| | ||| || Sbjct 9996122 GTCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTC 9996063 Query 75965 TCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATT 76024 ||||| | ||| || || || || || ||||| ||||| || || ||||| ||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 76025 GTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAA----GACTATCAAAAGGATAATG 76080 ||||| ||||| | ||| | || ||||| | || ||| || |||||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCA-AT-TTGCG--TGAACCCTCACTGTCGAAAGGAAGCCG 9995947 Query 76081 TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | || || || ||||| || || || || | ||| || ||||| |||| || ||| | Sbjct 9995946 CATTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCAT 9995887 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||||| | || ||||| | || || || ||||| |||||| || || || ||||| Sbjct 9995886 GTTGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATT 9995827 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC----AAATTTTCCATCTA 76256 || |||| ||| |||| |||||| |||| |||||| | || |||| | Sbjct 9995826 CCTCGTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT- 9995768 Query 76257 TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGG 76316 | |||||||| || | || || || || | ||||| || || | ||||| || | Sbjct 9995767 TAACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGGTGAGC 9995708 Query 76317 CATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGT 76376 ||||| | ||||| ||||||||||| ||||||||||| ||||||||||| || |||| Sbjct 9995707 TATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGT 9995648 Query 76377 TGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG 76436 || ||| ||||||||| ||||||||||| | | || || || ||||| | ||| | Sbjct 9995647 TGGACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGG 9995588 Query 76437 ATTCGATAATAG 76448 | || || |||| Sbjct 9995587 ACTCRATGATAG 9995576 Score = 118 bits (130), Expect = 2e-21 Identities = 163/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || || || || ||||| | |||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 || || || ||||| |||||||| |||| ||| || |||||| ||||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAATGC----A 9984063 Query 76868 ATAGAT----AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGT 76923 || ||| || || ||||| ||||| ||| || ||||| ||||| | || | ||| Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 76924 GTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGAAGAAA 76968 ||||||||| || || || || ||||| ||| |||||| | |||| Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAACAGGAAA 9983957 >seq7 Length=109384913 Score = 147 bits (162), Expect = 3e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 46880 TTTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGT 46939 |||| |||| || || ||||||||||| || | ||||||||||||||||||||||||| Sbjct 105116682 TTTCTGCACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGT 105116741 Query 46940 TTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTAC 46999 | || || || || ||||| || ||||| || || ||||| || | || || ||| || Sbjct 105116742 TCTCGATGGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGAC 105116801 Query 47000 AAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 |||| ||| |||| || ||||| || || |||||| || ||||| ||||| | Sbjct 105116802 TGAATCTTTC-CACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGG 105116860 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||||| || |||||| | ||||| | |||||| ||||| Sbjct 105116861 ACATGTTTGATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCA 105116904 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||||| || |||||||| || ||||| ||||| ||||| || ||||||||||| | | Sbjct 105117153 TTTGATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACATTTGC 105117212 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 || || ||| | |||| ||||| || | |||||| | |||||||||| Sbjct 105117213 CAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTT 105117261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712820900843520