Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq129 107 4e-18
seq281 87.8 4e-12
seq2935 86.0 1e-11
seq1688 86.0 1e-11
seq1453 86.0 1e-11
seq10 86.0 1e-11
seq6 86.0 1e-11
seq5 86.0 1e-11
seq3 86.0 1e-11
seq2742 84.2 5e-11
>seq2
Length=39772498
Score = 181 bits (200), Expect = 2e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| |||||||| |||||||| | || |||||| |||||||||||||| |
Sbjct 4313298 ACCACCACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGA 4313239
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | |||||||| |||||||| |||||||| || | | ||||| || ||
Sbjct 4313238 AAGTGTTCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGG 4313179
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || |||||||| ||||| || |||||||| | ||||| || || || ||||| ||
Sbjct 4313178 TATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTAC 4313119
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||| || || || |||||||| || | |||||| ||||| || ||||||
Sbjct 4313118 TTCCAGTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070
Score = 129 bits (142), Expect = 1e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
|||| || ||||||||||| | || ||||| || || || || || || || || ||||
Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908
Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029
| | || || ||||| || || ||||||||||| || ||||| || || || | |
Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848
Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|||||||||| | || || || ||||| ||||| ||||| || |||| ||||| ||||
Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788
Query 283090 ATATCTGCAT 283099
| ||||||||
Sbjct 4310787 AGATCTGCAT 4310778
Score = 127 bits (140), Expect = 4e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||| | || ||||| || || || || || || || || |||||
Sbjct 2636745 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 2636804
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| || || ||||||||||| || ||||| || || || | |||
Sbjct 2636805 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCG 2636864
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|||||||| || || || || ||||| ||||| ||||| || |||| ||||| |||||
Sbjct 2636865 ATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 2636924
Query 283092 ATCTGCAT 283099
||||||||
Sbjct 2636925 ATCTGCAT 2636932
Score = 91.5 bits (100), Expect = 3e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||| || | || ||||| | |||| |||||| |||||||||||||| | |
Sbjct 4313069 CCTCCACGCAGACGCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAA 4313010
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||||| | |||||||| |||||||| ||||||||
Sbjct 4313009 AGCGTCCTCCCATCCTCAAGTTGTTTGCCGGCAAA 4312975
>seq129
Length=450478
Score = 107 bits (118), Expect = 4e-18
Identities = 101/126 (80%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
||||| |||||||| ||||||| ||||| || || ||||| || |||||||| |||| |
Sbjct 101386 CCACCGCGCAGGCGCAGTACCAAGTGTAAGGTACTCTCTTTCTGTATGTTGTAATCAGAC 101445
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||||||||| || || || || |||||||| || | |||||||||||| ||
Sbjct 101446 AAG-GTGCGGCCATCTTCAAGCTGCTTGCCGGCAAATATTAGCCGTTGTTGGTCAGGGGG 101504
Query 282992 AATACC 282997
||| ||
Sbjct 101505 AATCCC 101510
>seq281
Length=276453
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
| || || ||||||||||| | || ||||| || || || || || || || || ||||
Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675
Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029
| | || || ||||| || || ||||||||||| || ||||| || || || | |
Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 164615
Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGA 283056
|||||||||| || || || || ||||
Sbjct 164614 CGATAGTGTCTGACGCCTCCACCTCGA 164588
>seq2935
Length=43313
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 42124 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 42180
>seq1688
Length=77306
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 15233 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 15289
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 27693 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 27749
>seq1453
Length=94963
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 29466 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 29410
>seq10
Length=51758932
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 42468802 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 42468746
>seq6
Length=23341858
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 12060983 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 12061039
>seq5
Length=36881487
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 10423119 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 10423063
>seq3
Length=34716904
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 20410723 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 20410779
>seq2742
Length=45117
Score = 84.2 bits (92), Expect = 5e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCC 168809
|||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 44901 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCC 44846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046568393097344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |