Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 5e-24
>seq2
Length=39772498
Score = 125 bits (138), Expect = 5e-24
Identities = 145/195 (74%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 44144 CTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGC 44202
||| ||||| || |||||||| |||| ||| |||| |||| ||||||||||| || ||
Sbjct 4310972 CTCACCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGC 4310913
Query 44203 AAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA 44262
||||| | |||||||| |||| || | || ||||| || ||||| |||||
Sbjct 4310912 GAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCAC 4310853
Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322
| | || |||||||| | |||||||| | || || ||||| || || ||||||||
Sbjct 4310852 ATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTT 4310793
Query 44323 CACGAAGATTTGCAT 44337
||||||||| |||||
Sbjct 4310792 CACGAAGATCTGCAT 4310778
Score = 118 bits (130), Expect = 8e-22
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| |||| ||| |||| |||| ||||||||||| || || ||||
Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
| | |||||||| |||| || | || ||||| ||| ||||| ||||| |
Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 2636862
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| || ||||| | | |||||||| | || || ||||| || || |||||||||||||
Sbjct 2636863 CGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 2636922
Query 44328 AGATTTGCAT 44337
|||| |||||
Sbjct 2636923 AGATCTGCAT 2636932
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| ||||| || || || ||||||||||| || | ||| | | || ||
Sbjct 4313279 ACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGTTCTTCCATCCTCA 4313220
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || |||||||| || | | ||| ||||||| ||| | |||||||| |||
Sbjct 4313219 AGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGG 4313160
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| || |||| | ||| | || || || | | ||| || |||| ||||| |||||
Sbjct 4313159 ATTTTA-GCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAGTGTAATGGTCTT 4313101
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| ||||||||||||||
Sbjct 4313100 ACCGGTGAGAGTCTTGACGAAGATTTGCAT 4313071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359934522290112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |