Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq281 114 3e-20 seq129 93.3 1e-13 >seq2 Length=39772498 Score = 150 bits (166), Expect = 4e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || || || || || || ||| || || Sbjct 4313074 CAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCTGAT 4313133 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || || |||||||| |||||||| ||||| || || || Sbjct 4313134 ACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAACAG 4313193 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || ||||| ||||| || || |||||||| || ||| | || || ||| || Sbjct 4313194 AGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAACATC 4313253 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||||||||| || ||||| ||| Sbjct 4313254 CAGAAAGAATCAACTCTTCATCTGGTT 4313280 Score = 149 bits (164), Expect = 2e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || ||||||||||||||||| |||||| Sbjct 2636929 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCAGAC 2636870 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||||||||| || |||||||| || |||||||| Sbjct 2636869 ACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 2636810 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || ||||| ||||| || | || || |||| || ||| | Sbjct 2636809 CGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACATT 2636750 Query 178104 CAAAA 178108 || || Sbjct 2636749 CAGAA 2636745 Score = 141 bits (156), Expect = 2e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || ||||||||||||||||| | ||| Sbjct 4310781 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCCGAC 4310840 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||| ||||| || |||||||| || |||||||| Sbjct 4310841 ACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAGCAG 4310900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || ||||| ||||| || | || || |||| || ||| | Sbjct 4310901 CGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACATT 4310960 Query 178104 CAAAAAG 178110 || |||| Sbjct 4310961 CAGAAAG 4310967 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || |||||||| || || || || || || ||||| ||| || || Sbjct 4312127 CAAATCTTYGTCAARACTCTCACTGGTAAGACCATTACACTGGAGGTAGAAGCGTCTGAT 4312186 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || || |||||||| |||||||| ||||| || || || Sbjct 4312187 ACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAACAG 4312246 Query 178044 CGACTTAT 178051 |||| || Sbjct 4312247 AGACTAAT 4312254 >seq281 Length=276453 Score = 114 bits (126), Expect = 3e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 177964 TCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAG 178023 |||||||||| |||||||| |||||||| || || |||||||||||||| || | Sbjct 164588 TCGAGGTGGAGGCGTCAGACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGG 164647 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 ||||||| || |||||||| ||||| |||||||| || || ||||| ||||| || | | Sbjct 164648 GAATCCCCCCAGACCAGCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGKCGCA 164707 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAG 178110 | || |||| || ||| | || || | Sbjct 164708 CCCTCTCCGACTACAACATTCAGAARG 164734 >seq129 Length=450478 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || ||||||||||||||||| || ||| Sbjct 105289 CAGATCTTCGTGAAGACGCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCATCGGAC 105230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || |||||||| ||||||||||| Sbjct 105229 ACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAAGAAGG 105189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203534775142784