Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq281 107 2e-18 seq129 87.8 2e-12 >seq2 Length=39772498 Score = 143 bits (158), Expect = 2e-29 Identities = 148/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||| | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791 | || ||||| ||||| | ||| | | |||||||||| ||| | || | ||||| | Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTC 2636861 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | |||||| || ||||||||| | || || || || || ||||| ||||| ||| Sbjct 2636862 TCGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 2636921 Query 41852 AAAATCTGCAT 41862 || |||||||| Sbjct 2636922 AAGATCTGCAT 2636932 Score = 141 bits (156), Expect = 9e-29 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||| || Sbjct 4310965 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 4310906 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGA 41793 || ||||| ||||| | ||| | | ||||||||| ||| | || | ||||| | Sbjct 4310905 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCY-TGAATCTTGGCCTTCACATTCTC 4310847 Query 41794 CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||||| || ||||||||| | || || || || || ||||| ||||| ||||| Sbjct 4310846 GATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAA 4310787 Query 41854 AATCTGCAT 41862 |||||||| Sbjct 4310786 GATCTGCAT 4310778 >seq281 Length=276453 Score = 107 bits (118), Expect = 2e-18 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 | ||||||||||| ||||||||||||||||| |||| || ||||||||||| ||||| | Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791 | || ||||| ||||| | ||| | | |||||||||| ||| | || | ||||| | Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTC 164616 Query 41792 GACACAGTGTCGCTCGACTCCACCTC 41817 | |||||| || ||||||||| Sbjct 164615 TCGATAGTGTCTGACGCCTCCACCTC 164590 >seq129 Length=450478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | |||| || | || ||||| ||||| ||||| || || | Sbjct 101384 CGCCACCGCGCAGGCGCAGTACCAAGTGTAAGGTACTCTCTTTCTGTATGTTGTAATCAG 101443 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | | |||||| | || || |||||||||||||| ||||| || || |||||||| | || Sbjct 101444 ACAAGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAATATTAGCCGTTGTTGGTCAGGGG 101503 Query 41754 GAA 41756 ||| Sbjct 101504 GAA 101506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462230401203200