Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq115302 224 1e-53 seq98090 104 2e-17 >seq115302 Length=2783 Score = 224 bits (248), Expect = 1e-53 Identities = 378/543 (70%), Gaps = 12/543 (2%) Strand=Plus/Plus Query 16948 ATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGT 17005 |||||||||||| ||||| || ||||| || |||||||| |||||||| ||||| ||| Sbjct 1749 ATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCT--TGATATTAGT 1806 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 ||||| ||||||||||| || ||||| || ||||| || ||||||||||| | ||| Sbjct 1807 TCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGCG 1866 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || |||| |||||| || || || || | ||| || || || | ||||| | | Sbjct 1867 AAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAAA 1926 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 |||| |||| | |||||||| | |||| || ||||| | |||| || Sbjct 1927 TTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGGT 1986 Query 17186 ATCGTTTCTATGGCCTTAAATAA----TTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 | ||||| | ||| || ||||| | | || ||| || | ||| |||||||| Sbjct 1987 AAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTT--TGGATCTCG--GATATACGT 2042 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 ||| || || || |||||||| ||||| || | || |||||||| || ||||| ||||| Sbjct 2043 ATCAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTA 2102 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361 || || || ||||| | |||||||||||| | ||| ||||| ||| ||||||||| Sbjct 2103 GAAACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTT 2162 Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 || || || || || |||||||| || | || ||| ||| || | ||| Sbjct 2163 TACAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGA 2222 Query 17422 CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 |||| | || | ||| || | ||||| |||| || |||||||| | ||||| Sbjct 2223 CGGTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCA 2282 Query 17482 AAA 17484 ||| Sbjct 2283 AAA 2285 >seq98090 Length=13235 Score = 104 bits (114), Expect = 2e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| | ||||| || || || | || ||||| ||| || ||||||| || Sbjct 11123 TTCATGAAGCGTATTTTACCAAAAATGGGCCGTTCAGCCCATCCTTGATCGTGGATTCCA 11064 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | | ||| | || ||||| || || || |||||| |||| ||||| ||| | Sbjct 11063 CCAATTGACCACATACAGCCCACATAGCCATTAGGATCCCTTCCGTCTAAACTATATCGA 11004 Query 119903 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtt 119962 || ||||| |||||| | | | || ||| ||| | || ||||||| || ||| Sbjct 11003 TCATTTAAATAGATAGCAATTCGGAGAGCTTCTTCTGGACTTTCAGTCCATTCGAGGATT 10944 Query 119963 tttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGT 120022 ||||| ||||| ||||| || | ||||||||||||| || ||| ||||| ||| | | Sbjct 10943 TTTTTCGCCCAATACATTCGCATAAATCCATGCATTTTCCCCTCATTAACCAATTGTAAT 10884 Query 120023 TGTGCGGCGTTCCATAA 120039 || || || |||||||| Sbjct 10883 TGAGCTGCATTCCATAA 10867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516336716987520