Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq146520 165 6e-36 >seq146520 Length=2054 Score = 165 bits (182), Expect = 6e-36 Identities = 323/477 (68%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 || || || |||||| || | ||| || |||| |||||||| || ||| || Sbjct 376 CAGGGCATTGATCAGTTGTACGATGTGATCGATAAAATTAAAAATAATCCAATGGATCGT 435 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || || || || ||| | |||||||| | || ||||| | |||| ||||| |||||| Sbjct 436 CGTATCATAATGTCGGCATGGAATCCCACCGACATCCCACTTATGGCCCTACCACCATGT 495 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 || ||| ||||||||||| |||| |||||| |||| || | || || | Sbjct 496 CATGTTCTATCACAGTTTTACGTGTCAAATGGTGAACTATCGTGTATGTTGTATCAACGT 555 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || | |||||||||||||| || || || || || ||| | ||| || || || | Sbjct 556 TCCGCCGATATGGGCCTTGGTGTGCCATTTAATATCGCTAGCTATTGTCTGCTGACGCAT 615 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 || | |||||||| || ||||||||||| || ||||| |||||||||||||| |||| | Sbjct 616 ATGATTGCGCATGTGACGGGACTTAAAACAGGCGATTTTATTCATACAATGGGCGATGTA 675 Query 19170 CATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCT 19229 ||| |||| | |||||||| || | || || | | ||| |||||| Sbjct 676 CATGTTTATCTAAATCATATCNCCACTGCAGGAG--CAATTGGTGCGAAAACCAAAAGAA 733 Query 19230 TTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGAT 19289 || || |||||||| | ||||||||||| | || | || |||| | || ||| Sbjct 734 TTCCCAAAACTTAAAATCAAACGAAATGTAACGAAAATTGAAGATTTTACAATCGATGAT 793 Query 19290 TTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTAA 19346 || | | | | ||| |||| | || || | ||||||| |||||| ||||| Sbjct 794 TTGGAAGTGGTCGACTATGATCCGTATCCACCAATTAAAATGGCCATGGCTGTTTAA 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398594167592880