Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq146712 430 2e-115 seq115302 313 3e-80 >seq146712 Length=6971 Score = 430 bits (476), Expect = 2e-115 Identities = 1130/1718 (66%), Gaps = 65/1718 (4%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || || ||||| |||||||| |||||||| ||||||| || | |||| || |||||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| ||||| || ||| | || || |||| || ||||| | ||||| ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || || || | || || ||||| || || | ||| || || | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGAT 53065 || | |||||||||| | ||| |||| || | | | |||| ||||| || Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 53066 CCA-------------------------------CCATCTACC---ATAATCCTATTCTT 53091 ||| |||| |||| |||| | ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 53092 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 53151 || ||||||| ||| | | | |||||||| | | | | ||| | || ||||| Sbjct 2711 TATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTAC 2770 Query 53152 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 ||||||||| ||||| | ||| | | || || | || ||||| ||||| | ||| Sbjct 2771 TTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGA 2830 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 |||||||||||||||||||| || || || ||||||||||| || || | | | | Sbjct 2831 TTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGA 2890 Query 53272 ATTTCTAAGACCGTATG-TTCT-GATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGAT 53327 |||||||| || ||| ||| |||||| | || | | ||| ||||| ||| | || Sbjct 2891 ATTTCTAACTCC--ATGCTTCGCGATTTTTGCCTTCAACGCGGT--CCAATCCCATAAAT 2946 Query 53328 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 53386 | | || || | || || ||||| | | || |||| Sbjct 2947 CTGTTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACT-TCCT 3005 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 ||||||| ||||| | ||| || ||||||||||| ||||| || |||||||||||| Sbjct 3006 TCATATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCG 3065 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || || || || ||||| || | || |||| |||||| || || ||| ||| | Sbjct 3066 TAGTATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCA 3125 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 ||| | | || || || || || | ||||| |||||||| || || |||| |||| Sbjct 3126 TAACGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGT 3185 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 ||| |||| || || ||||| || || ||||| ||||||| ||| || |||||||| Sbjct 3186 CTCATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTT 3245 Query 53627 AGGTTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 | ||| | |||||| || || || |||| ||| |||||| ||| | Sbjct 3246 AAATTTTTTGTCACAATT---TTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTT 3302 Query 53684 TC--TA----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 || || |||||||||| || | || || || || | ||||||||||||||| ||| Sbjct 3303 TCATTAACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCA 3362 Query 53738 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | ||| || || || || || | ||| ||| || ||||| || | | Sbjct 3363 TCTTTTGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATA 3422 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 ||||||||||| ||| ||||| ||||| ||||| || || | || |||||| Sbjct 3423 TTTTGTTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTT 3482 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTAT 53917 |||| || ||| ||||| || | ||| | || | | |||| | | | | | Sbjct 3483 TCAACTTGACTTTCAATAATAGCATACCATA-GAGATTGGGCTTTCACTTTGCGTAGAAA 3541 Query 53918 -CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 | ||| ||||| ||| ||| | | |||||| || ||||||||| || || Sbjct 3542 ACGGCCTTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTG 3601 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTT 54035 | ||||||||||| | |||||||| || ||||| ||| | | | |||| || || | Sbjct 3602 AAGACCAGGACATTCGTGAGGACACATTAAAGACCAATCTTCAT-TTGCTTCAACGCGCT 3660 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 ||||||| | || || ||||| || || ||| | ||||| || ||| |||||| | Sbjct 3661 TCATAAATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTT 3720 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | |||||||| || || | ||| || || | | ||||||| |||||| ||||| | | Sbjct 3721 TACCTGTATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGAT 3780 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | || || |||||||| || || ||||| | ||| | ||| || |||| Sbjct 3781 AAATGGCAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTAT 3840 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | || ||||| |||| || | || ||||| || |||||| || || | ||||| Sbjct 3841 TGTACACTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATG 3900 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 ||| | || |||||| | || || ||||| || ||||| ||| || |||| Sbjct 3901 ATCCCTTTGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTA 3960 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGT 54394 |||| ||| |||| || |||||||| || || || |||||||| ||| || |||||| Sbjct 3961 ATGCACATTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAA-C 4019 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | ||| || || | || | ||| ||||| || ||| | || || || || Sbjct 4020 AAAAAGCATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCA 4079 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 54492 || || || || |||| || | || ||||||||| || Sbjct 4080 TGAGTGAAATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 |||||| || | ||||| ||||| | ||| |||||||||||||| | || || | ||| Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAAT-TTTTCGTT 4569 Query 54577 T-ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | ||||||| ||| || ||| |||||| |||||||| |||||||| ||||| ||| | Sbjct 4570 TAATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAAT 4629 Query 54636 CTCGTTCGTAAATAATAACTGAGTT 54660 | || || ||||| ||| |||| || Sbjct 4630 CACGATCATAAATTATAGCTGAATT 4654 >seq115302 Length=2783 Score = 313 bits (346), Expect = 3e-80 Identities = 404/554 (73%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 ||||||||||||||| | ||| || ||||| ||||||| || |||||||| |||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 |||||| ||||| || | || ||||| |||||||| ||||| | |||||||||||| || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 || ||| ||||||||||||||| || || || || ||||||| | ||| ||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 24296 AC-CGGCGCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | || || | | | || | |||| | | | ||||| || || |||||||||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 | || || | ||||| || | | ||| || || |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 ||| | |||||| ||||| || ||||||| ||||| ||||| |||||||| |||||||| Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 ||| | || ||||| || || |||||| | || ||||| |||||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || || ||| ||||| ||||| || | ||| || ||||| | ||| || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 | ||||| || ||||||| || ||||| |||| || |||||||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 24653 TGATGCCTCTGCCT 24666 |||||| || |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 |||||||| || ||| || ||||| |||| ||||||||| ||||| ||||| || Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || |||||||| ||||||||| | | ||||||| | || || ||| ||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 ||||||||| | || | ||| || |||||||| |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT 24061 ||||| || | | || ||||| | || | || | ||| ||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592334785086720