Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq105237 122 7e-23 seq53184 82.4 7e-11 >seq105237 Length=11214 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014 ||| ||||||||||| || | ||||||||||||||||| ||||| ||| || || Sbjct 8876 TGTCAAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGA 8935 Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074 ||| |||| || | | || | || |||||| |||||||||||| | || Sbjct 8936 ACCATCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACC 8995 Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||||||| | || || ||||| ||||||||| | |||||| || ||| || | || Sbjct 8996 AGATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGA 9055 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||| || ||||| || || | || ||||| Sbjct 9056 TTACAATATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq53184 Length=5087 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || |||||||||| | | |||||||| || |||||| ||||| Sbjct 5013 GATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 4954 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| || | | ||| |||| ||||| || || ||||||||||| ||||| |||| Sbjct 4953 GATGGTCGTACATTAT--CCGACTACAACATCCAAAAGGAATCTACACTTCATTTGGT 4898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427360505451920