Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq105237 134 1e-26 seq77412 105 5e-18 seq53184 91.5 1e-13 seq47011 82.4 6e-11 >seq105237 Length=11214 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25028 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 25087 ||| ||||||||||| || | ||||||||||||||||| ||||| ||| || || Sbjct 8876 TGTCAAAATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGA 8935 Query 25088 ACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 25147 ||| |||| || | | || |||| |||||| |||||||||||| | || Sbjct 8936 ACCATCAGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACC 8995 Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||||||| | || || ||||| ||||||||||| |||||| || ||| || | || Sbjct 8996 AGATCAACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGA 9055 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||| |||||||| || || | || ||||| Sbjct 9056 TTACAATATCCAAAAGGAGTCGACATTACATTTGGTG 9092 >seq77412 Length=2780 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| || || || || || || || ||| ||||| || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || |||||||| | || ||||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | | |||||||| || ||||||||||||||| || | | ||| ||||||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 166 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGT 25243 | |||||||| |||||||| ||||| |||| Sbjct 165 ACATTCAAAAAGAATCTACACTTCATTTGGT 135 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/98 (80%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCC 25205 |||||||||| | ||||| || || ||||| ||||| |||||| || | | ||| || Sbjct 458 AGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAAGATGGTCGTACATTAT--CC 401 Query 25206 GATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||| |||||||||||||| || ||||| |||| Sbjct 400 GATTACAACATTCAAAAGGAATCCACACTTCATTTGGT 363 >seq53184 Length=5087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/118 (78%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || |||||||||| | | |||||||| || |||||||||||| Sbjct 5013 GATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 4954 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || | | ||| |||| ||||| || |||||||||||||| ||||| |||| Sbjct 4953 GATGGTCGTACATTAT--CCGACTACAACATCCAAAAGGAATCTACACTTCATTTGGT 4898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||||||||| | || |||||||||| | | |||||||| || ||| Sbjct 4794 AAAATTCAAGATAAAGAAGGAATTCCACCAGATCAACAACGTTTAATCTTTGCTGGTAAA 4735 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| || || | |||||||| || ||||||||||| || |||||| Sbjct 4734 CAATTAGAAGATGGTCGTACATTGTCGGATTACAACATCCAAAAGGAATCCACACTTCAC 4675 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| | || |||| || || Sbjct 4674 TTGGTACTTCGTCTACGTGGTGG 4652 >seq47011 Length=3271 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| | ||||| || ||||| ||| || || || | Sbjct 1687 ATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAACCCTTGAGGTTGAGCCATCC 1628 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||||| || |||||||| | || ||||||| Sbjct 1627 GATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCACCAGATCAA 1568 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || || ||||||||||||||| || || | ||||||||| Sbjct 1567 CAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCGTACCTTGTCGGATTACAAT 1508 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| || ||||| Sbjct 1507 ATCCAAAAGGAATCCACACTTCA 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409861249313696