Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq98090 250 4e-61 seq105237 174 2e-38 seq53184 163 4e-35 seq77412 149 9e-31 seq1971 100 4e-16 seq184144 89.7 8e-13 >seq98090 Length=13235 Score = 250 bits (276), Expect = 4e-61 Identities = 813/1246 (65%), Gaps = 31/1246 (2%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 |||||||| || ||| ||||||| |||| |||| | | ||||||||||| || || Sbjct 11153 ACATCAAACTTTCGTTTACATCCACTATAATTCATGAAGCGTATTTTACCAAAAATGGGC 11094 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 | ||| |||| || ||| || || |||| ||||||||||||||| || ||||| ||| Sbjct 11093 CGTTCAGCCCATCCTTGATCGTGGATTCCACCAATTGACCACATACAGCCCACATAGCCA 11034 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT 202939 || ||||| | ||| |||| | |||| ||||||||||| | ||| Sbjct 11033 TTAGGATCCCTTCCGTCTAAACTATATCGATCATTTAAATAGATAGCAATTCGGAGAGCT 10974 Query 202940 TCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCA 202999 |||||||| || |||||||| | |||||||| ||||||||||||| | | ||||| Sbjct 10973 TCTTCTGGACTTTCAGTCCATTCGAGGATTTTTTTCGCCCAATACATTCGCATAAATCCA 10914 Query 203000 TGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 |||||||| || | ||| || |||| ||| | |||||||||||||| ||||| ||| Sbjct 10913 TGCATTTTCCCCTCATTAACCAATTGTAATTGAGCTGCATTCCATAAATCGTCATACGTT 10854 Query 203060 AATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTTCA 203119 |||| ||||| | | | | | || | || || || |||| |||||||| ||| Sbjct 10853 AATGATTTTTCCAACTCGTCCGATGTGTACAAATATTCTCGTTTATCCTTTTTATGATCA 10794 Query 203120 TTTAGTGTTTTTATTGCCCAATTATTAGCACCAT-TTATATTATCGTAATTTTCATTATA 203178 |||| ||| | ||||| || | | ||| | | | |||| || | |||||| || Sbjct 10793 TTTAAAGTTGTAGCCGCCCAGTT-TGATAACCCTCTAAGGCTATCATAGTGTTCATTGTA 10735 Query 203179 ATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACTTCTAC 203238 || ||||| |||||| ||| ||| || | ||| ||||| |||||||| ||| | || Sbjct 10734 GTAGCAAAAGTTATCAGATAATTCGCGCCGTACAATGGCTTCCTCACAAAACACTGCAAC 10675 Query 203239 -CGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGTTGAAA 203297 | || | | ||| | |||| | || | | ||| || | ||| ||| | Sbjct 10674 ACTATCT-GCGTATTTTGTTTTGAACTTTTGTACGACTAGTACACAACGCTGAACTGAGA 10616 Query 203298 TTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATT--TGGATCATT 203355 ||||||||||||| | |||||| |||||||| | || || ||| ||||||||| Sbjct 10615 TTTGACCAAAATGAAACCATGGCGATAAATTGGATGAAGCGTT--GATTAATGGATCATT 10558 Query 203356 TCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaatgc 203415 | |||| || | | ||| | || |||| ||| || | | ||| | || Sbjct 10557 GCGTTTTGTATTAAACAATTTAAGTCGTTTTTCACAAAAGTCTTCCAGAACTTTTACAGC 10498 Query 203416 a-tattttGTACCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTAATG 203474 | | | | | |||| ||| ||||| || | ||| | | ||||| | || | Sbjct 10497 AGCAATATAT-CCAGGTTTGGCCCACTTCACCTCGTCAACTGTACGATCAACTTCCAACG 10439 Query 203475 ATTGT---TCTGCttttttccaa-ttattattt--attttaatatatgtattataagtat 203528 ||| | | ||| ||||| ||||| ||| |||||||| ||||| | || Sbjct 10438 --TGTCAATAAG-TTTAGTCCAATTTATTGTTTCCGATTTAATATCACCTTTATAGGAAT 10382 Query 203529 gtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTATTTC 203588 |||| |||| |||| || | ||| | |||| | ||| || | || |||||||| | Sbjct 10381 GTTTTATAACAGGTGGGAACTGAGTAAGATATGCACTTAAATTTTTGTTAATTTTATTCC 10322 Query 203589 TAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAATATTAT 203648 ||| || ||| | ||| || ||||| | ||||||| ||| || || |||| Sbjct 10321 GAATCGTCCGTGCTGCATACTCCTGTTTATCTGATGTAATCCAAACTGGGACTATGTTAT 10262 Query 203649 GTGAATCAACTTG--ATA----AACATCAATATTTATTTTACTAATAAGTTGATTTACCC 203702 | | ||| ||||| ||| ||||| | || ||||| ||| | |||| Sbjct 10261 GGGCATCGACTTGGCATAGTGGTACATCCTTCGGTAGGTTACTCTTAACCGAGTCAACCC 10202 Query 203703 AATTATTAAATATTTTAATAGGATAAAAATCAACAATCAATAC-ACCAATATTATAtttt 203761 || | |||| | |||| ||| || ||| ||| || ||| || || || Sbjct 10201 AAGATCTTGGTATTCGCAGAGGACTAAAGTC-ACATACAACACTACCGATCAAATTTTCC 10143 Query 203762 tttATAAATTTTGGTAATACATCTACTGATATTCCTATCAATAGATGAAAATGTATATTT 203821 || | ||||||||||| | | | | |||| | | | ||||||| ||||||| Sbjct 10142 TTAACAAATTTTGGTACCTCCGTTCCCGCATTTCCAGTTAGCATGTGAAAATTTATATTT 10083 Query 203822 AAATTTTTACATTCTTCTTCCATTTGTTTAACACCATTCAACATAAAATCAAATTGTCTA 203881 | ||| | ||||||| || | | | || || |||| |||||||| | ||| || | Sbjct 10082 AGATTATGACATTCTGCTGCAACCTCTTCAATACCAGATAACATAAATTTAAAATGACGT 10023 Query 203882 ATTGTAGCATTAAGAAATTCTGGTACTAAACATATACACATATGTAATGACGATTTTGAT 203941 || || |||| ||||| | ||||| | ||| | || | | |||| || ||| || Sbjct 10022 ATAGTGGCATCTAGAAACTTAGGTACGAGACAAAAGCAGACGTACAATG--GAATTTTAT 9965 Query 203942 --TTTAATGCTAATTCTTGTGCATAAATTAAACCCCAATTATCTTG 203985 |||| |||| | ||| ||| | | || |||| || ||||| Sbjct 9964 TCTTTAGAGCTAGCTTTTGCGCAAATAAAAATGCCCAGTTGTCTTG 9919 >seq105237 Length=11214 Score = 174 bits (192), Expect = 2e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| | || ||||| || || || | ||| | ||| || Sbjct 8882 AATGCAAATCTTTGTAAAAACATTGACGGGCAAGACCATCACCCTTGAGGTCGAACCATC 8941 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| |||||||| |||||||||||||| ||||| ||||| Sbjct 8942 AGATACAATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATTCCACCAGATCA 9001 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||||||||| ||||||||||| ||| | ||||||| ||||| || Sbjct 9002 ACAACGTCTCATTTTTGCAGGCAAACAATTAGAAGATGGCAGAACATTGTCTGATTACAA 9061 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || || |||||||| | ||| | || |||||||| Sbjct 9062 TATCCAAAAGGAGTCGACATTACATTTGGTGCTCCGTCTCCGTGGTGGTAT 9112 >seq53184 Length=5087 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| |||| || ||||| || || ||||| ||||| | Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| |||||||||||||||||||| || ||||| |||||| Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||||||||| ||| |||| ||||| ||||| || Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| || | || ||||| | ||| |||| |||||||| ||| || Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGGTATGCAAATTT 4641 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || ||||| || || ||||| ||||| | | Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| |||||||||||||| || ||||| || ||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| |||| ||| | ||||| | || || ||| Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||||||| || || | ||||| || |||||| | || || || Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTATTACGTCTTCGCGGCGG 4424 Score = 120 bits (132), Expect = 5e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAAC 124620 |||| || || || || ||| | || | ||| || || || ||| || ||||| Sbjct 5084 TAACCGGTAAGACAATTACTTTGGAAGTAGAACCATCCGACACCATTGAAAACGTAAAAG 5025 Query 124621 AGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAA 124680 || || |||||||||||||| |||||||| ||||||||| | | || ||||| || | Sbjct 5024 CCAAGATCCAAGATAAAGAAGGAATACCACCAGATCAACAACGTTTAATCTTTGCTGGTA 4965 Query 124681 AACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGC 124740 ||||||| || ||| |||| |||||| || || || || ||||| ||||| || | | Sbjct 4964 AACAATTGGAAGATGGTCGTACATTATCCGACTACAACATCCAAAAGGAATCTACACTTC 4905 Query 124741 ATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||| | ||| | || |||||||| ||| || Sbjct 4904 ATTTGGTACTTCGTCTTCGTGGTGGTATGCAAATTT 4869 >seq77412 Length=2780 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || |||| || || || || ||| | || | ||| || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || ||| |||| |||||| ||||| || Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||||||||| | ||| | || |||||||| Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGGTAT 114 >seq1971 Length=4725 Score = 100 bits (110), Expect = 4e-16 Identities = 155/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTC--TAATTTAAA 124618 ||||||| |||||||| ||| ||| | ||| || ||| | || |||| ||| Sbjct 550 TAACAGGAAAAACTATTACTCTAGCAGTAGAACCATCCGATTCCATCAAAATAATCAAAA 609 Query 124619 ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGG 124678 ||| | |||||||| || || | || | ||| ||||| ||| | |||||||||||||| Sbjct 610 ACA--AGATTCAAGAGAAGCAAAGAATTCTACCAGATCAGCAACGCCTTATTTTTGCAGG 667 Query 124679 AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTT 124738 |||||| | || ||| | |||| | || ||||| |||| | | |||||||||| Sbjct 668 TAAACAACTTGAAGATGAACAAACAATTTCCGACTATAACATTCGATCAAAATCAACTTT 727 Query 124739 GCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||| |||||| | | |||||| || ||||| Sbjct 728 TCATTTGGCATTACGTCTTCTTGGTGGT-CTACAAATT 764 >seq184144 Length=1006 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || ||| |||| || ||||||| ||||| || ||| ||| | ||| | Sbjct 265 TAGAATGCAGATCTTTGTAAACACTGTAACAGGAAAAACAATTACTCTAGCAGTAGAACC 324 Query 124595 AAATGATACAATTTC--TAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 | ||||| || |||| |||||| | |||||||| || || | || | ||| Sbjct 325 ATCCGATACCATCAAAATAATCAAAAACA--AGATTCAAGAAAAGCAAAGAATTCTACCG 382 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 ||||||||| | |||||||||||||| |||||| | || ||| Sbjct 383 GATCAACAACGCCTTATTTTTGCAGGTAAACAACTTGAAGAT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753691405875200