Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq77412 96.9 3e-15 seq105237 89.7 4e-13 seq47011 87.8 2e-12 seq53184 84.2 2e-11 >seq77412 Length=2780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||| ||||||||||||||||||||| | || || ||| || Sbjct 135 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGATAATGTACGACCATCTTCC 194 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || || |||| | ||| || ||||| || || || || || |||||| Sbjct 195 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 254 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||| | || | || || || | || | || || Sbjct 255 ATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGT-TCTACTTCAAGAGTGATTGTCTT 313 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | |||||||| ||||| ||||| Sbjct 314 ACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 >seq105237 Length=11214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| ||||| ||||| || |||||||| || || | ||| || Sbjct 9092 CACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTC 9033 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| || || | |||||||| || ||||| || || || || || || || Sbjct 9032 TAATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 8973 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 |||||| ||| || | ||| | || || | || | |||||||| | ||| | || | Sbjct 8972 AATTTTAGCTTTGACATTTTCAATTGTATCTGATGGT-TCGACCTCAAGGGTGATGGTCT 8914 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||||||||||| || ||||| Sbjct 8913 TGCCCGTCAATGTTTTTACAAAGATTTGCAT 8883 >seq47011 Length=3271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| || || | ||| || || ||||| || |||||||| || || ||| ||| || Sbjct 1478 CACTAAATGAAGTGTGGATTCCTTTTGGATATTGTAATCCGACAAGGTACGCCCATCTTC 1537 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| |||||| | || | ||| || ||||| || || || || || |||||| Sbjct 1538 CAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATCCCTTCTTTGTCTTG 1597 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | ||||| || || | ||| ||||| | ||| | || || Sbjct 1598 GATTTTAGCCTTGACATTTTCGATAGTATCGGATGGCTCAACCTCAAGGGTTATGGTCTT 1657 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||||||||| || |||||| Sbjct 1658 TCCCGTAAGTGTTTTTACAAAGATTTGCATG 1688 >seq53184 Length=5087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || || ||||| ||||||||||| || || || ||| || Sbjct 4670 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTCT 4729 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| ||||| |||| | ||| || ||||| || || || || || || ||| | Sbjct 4730 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGA 4789 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | || | ||| || | || ||||| | || | ||||| Sbjct 4790 ATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTTA 4849 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| ||||| ||||| ||||| Sbjct 4850 CCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432842392477888