Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq98090 129 1e-24 seq15552 113 8e-20 >seq98090 Length=13235 Score = 129 bits (142), Expect = 1e-24 Identities = 308/458 (67%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 189281 ATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATC 189340 |||||| | | ||| |||| ||||| ||||| ||||| || |||| |||||||| | Sbjct 10699 ATTGTACGGCGCGAATTATCTGATAACTTTTGCTACTACAATGAACACTATGATAGCCTT 10758 Query 189341 C-AGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAA 189399 || | ||| | ||||| | ||| ||| | ||||| | || ||| || | Sbjct 10759 AGAGGGTTATCAAAC-TGGGCGGCTACAACTTTAAATGATCATAAAAAGGATAAACGAGA 10817 Query 189400 GTATATATATTCCATTAAACAACTCG-AAAAAGCGGAAACTCATGATCCTCTATGGAACG 189458 ||| | || | || || | | | ||||| | ||| |||| | ||||||| | Sbjct 10818 ATATTTGTACAC-ATCGGACGAGTTGGAAAAATCATTAACGTATGACGATTTATGGAATG 10876 Query 189459 CGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGG 189518 | | ||| | || |||| | || || ||||||||| | ||| | ||||||||||||| Sbjct 10877 CAGCTCAATTACAATTGGTTAATGAGGGGAAAATGCATGGATTTATGCGAATGTATTGGG 10936 Query 189519 CTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATT 189578 | || || || || ||||||||| || || ||||| ||| | | | |||||||| Sbjct 10937 CGAAAAAAATCCTCGAATGGACTGAAAGTCCAGAAGAAGCTCTCCGAATTGCTATCTATT 10996 Query 189579 TGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGT 189638 | || | || ||||||| | ||||||||| || || || || |||||||||| Sbjct 10997 TAAATGATCGATATAGTTTAGACGGAAGGGATCCTAATGGCTATGTGGGCTGTATGTGGT 11056 Query 189639 CTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGAT 189698 | ||| | ||| | |||||| || ||| ||| | || || ||||| || ||| | | Sbjct 11057 CAATTGGTGGAATCCACGATCAAGGATGGGCTGAACGGCCCATTTTTGGTAAAATACGCT 11116 Query 189699 ATATGAATTATGAGAGTTCTAAGAAGAAA-TTTGATGT 189735 ||||||||| | | ||| | |||| |||||||| Sbjct 11117 TCATGAATTATAGTGGATGTAA-ACGAAAGTTTGATGT 11153 >seq15552 Length=8850 Score = 113 bits (124), Expect = 8e-20 Identities = 173/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 135637 GATCCTGTTTTGCATATAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTT 135695 |||||||| || ||||| || ||| | || ||||||||| | || |||| || || | Sbjct 5885 GATCCTGTATTACATATTGA-CTTGGTGAAATGGGCGGACATAATTGTTATTGCACCACT 5827 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 | |||||||| |||||||||||||| |||||||||||||||| |||| | | Sbjct 5826 AGATGCAAATACACTAGCAAAAATAGCTTGTGGTATATGCGATAATCTACTTCTTTGCAC 5767 Query 135756 TGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815 || | || |||||| || |||||| | | || ||||| || ||||| || || Sbjct 5766 AGTTCGGGCTTGGGATGTAACCAAACCGTTACTGTTTTGTCCAGCGATGAACACAAAAAT 5707 Query 135816 GTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATGGGTTTCATAGA 135875 |||||||||||| || || | ||| || ||||| || || | ||| | || ||| Sbjct 5706 GTGGGAACATCCAATCACCAAGCCACAAATTGATACTTTGAAGAGTTGGGGATACAAAGA 5647 Query 135876 AATA 135879 |||| Sbjct 5646 AATA 5643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921040396914560