Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01]
186,864 sequences; 541,697,276 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq53184 107 3e-18
seq105237 102 1e-16
seq77412 102 1e-16
>seq53184
Length=5087
Score = 107 bits (118), Expect = 3e-18
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||| | |||||| ||||| | ||||| ||||| ||||| || || |||
Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| |||| ||||| || || ||||| || | ||| || || || |||
Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||||||||| ||||| || ||| ||
Sbjct 4544 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACC 4603
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| ||||||||||||||| ||||| || || | ||| ||||||||
Sbjct 4604 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/210 (68%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
|||||| || | || ||||| || || || ||||| || | || | | ||| ||
Sbjct 4669 TACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTC 4728
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||| |||||||| || || | ||| ||||| || ||||||||||||||||||||
Sbjct 4729 TAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTG 4788
Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247
||||| || ||| || |||| ||||||||||||
Sbjct 4789 AATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTT 4848
Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||| ||||| || || | ||| ||||||||
Sbjct 4849 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | ||||||||| | |||||||| || || || || || ||
Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || |||||||| |||||||| || || | ||| ||||| || ||
Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||||||||||||
Sbjct 5000 ATTCCTTCTTTATCTTG 5016
>seq105237
Length=11214
Score = 102 bits (112), Expect = 1e-16
Identities = 145/212 (68%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||||||||| || || || || ||||| ||||| || | ||||||| ||| |||
Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCT 9032
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
|||||||| || |||||||| | | ||| ||||| || ||||| ||||||||||| ||
Sbjct 9031 AATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 8972
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
|||||||| ||| || || || ||||| || ||
Sbjct 8971 ATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTG 8912
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
|| || |||||||| | || |||||||||||
Sbjct 8911 CCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880
>seq77412
Length=2780
Score = 102 bits (112), Expect = 1e-16
Identities = 154/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | |||||||| | ||||||||||| || || ||||| ||
Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || |||||||| || ||||| || || | ||| ||||| || |||
Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||| ||||| || ||||| |||||||
Sbjct 237 ATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACT 296
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || |||||||| ||||| ||||| ||||| | ||| ||||||||
Sbjct 297 TCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741789671034880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |