Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq53184 107 3e-18 seq105237 102 1e-16 seq77412 102 1e-16 >seq53184 Length=5087 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | |||||| ||||| | ||||| ||||| ||||| || || ||| Sbjct 4424 CCGCCGCGAAGACGTAATACTAAATGAAGTGTAGACTCTTTTTGAATATTGTAGTCAGAA 4483 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| |||| ||||| || || ||||| || | ||| || || || ||| Sbjct 4484 AGCGTTCGCCCATCTTCTAGCTGTTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGTGGA 4543 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| || ||| || Sbjct 4544 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCAGACGGTTCAACC 4603 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||||||||||||| ||||| || || | ||| |||||||| Sbjct 4604 TCTAATGTGATTGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 4650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || | || ||||| || || || ||||| || | || | | ||| || Sbjct 4669 TACCAAGTGAAGTGTGGATTCCTTTTGGATGTTGTAATCCGACAATGTACGACCATCTTC 4728 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||| |||||||| || || | ||| ||||| || |||||||||||||||||||| Sbjct 4729 TAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTG 4788 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| || ||| || |||| |||||||||||| Sbjct 4789 AATTTTGGCTTTTACATTCTCAATGGTATCGGACGGTTCAACCTCTAATGTGATTGTTTT 4848 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| ||||| || || | ||| |||||||| Sbjct 4849 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 4878 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||||||| | |||||||| || || || || || || Sbjct 4880 CCACCACGAAGACGAAGTACCAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 4939 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| |||||||| || || | ||| ||||| || || Sbjct 4940 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGT 4999 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 5000 ATTCCTTCTTTATCTTG 5016 >seq105237 Length=11214 Score = 102 bits (112), Expect = 1e-16 Identities = 145/212 (68%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||||||| || || || || ||||| ||||| || | ||||||| ||| ||| Sbjct 9091 ACCAAATGTAATGTCGACTCCTTTTGGATATTGTAATCAGACAATGTTCTGCCATCTTCT 9032 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||| || |||||||| | | ||| ||||| || ||||| ||||||||||| || Sbjct 9031 AATTGTTTGCCTGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 8972 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||||| ||| || || || ||||| || || Sbjct 8971 ATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCGACCTCAAGGGTGATGGTCTTG 8912 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || |||||||| | || ||||||||||| Sbjct 8911 CCCGTCAATGTTTTTACAAAGATTTGCATTTT 8880 >seq77412 Length=2780 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||||||||||| || || ||||| || Sbjct 117 CCACCACGAAGACGAAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAT 176 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| || ||||| || || | ||| ||||| || ||| Sbjct 177 AATGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 236 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| || ||||| ||||||| Sbjct 237 ATTCCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGGTTCTACT 296 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| ||||| ||||| ||||| | ||| |||||||| Sbjct 297 TCAAGAGTGATTGTCTTACCGGTTAAGGTTTTTACGAAAATTTGCAT 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741789671034880