Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq115302 244 1e-59 >seq115302 Length=2783 Score = 244 bits (270), Expect = 1e-59 Identities = 393/561 (70%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAA 16275 ||| ||||||||||| | ||| ||||||||||| || ||||||||||| || ||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 ||||| |||||||| | ||||||||| || || |||||||| | ||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395 || ||| |||||| || ||||| || || || ||||||| | || ||||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 16396 CGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA-GT 16454 | ||| ||| ||||||| | ||||| | ||||| | ||| ||||| | Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514 | | ||| || | ||||| |||||| | | ||||| |||| ||||| |||| Sbjct 1986 TAAAGTT-TCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTAT 2044 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | ||||| | ||| ||||| || ||||||| ||| ||||| || || ||||| || || | Sbjct 2045 CAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGA 2104 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | || | ||||||| |||||| ||||| | || | ||| |||| |||||||| | Sbjct 2105 AACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTA 2164 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 | || ||||| ||||| ||||| ||||||| ||| |||||| | ||| | Sbjct 2165 CAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAA----GTGACGT--T 2218 Query 16695 CTGAAAGTTTTA------ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAG 16748 | || |||||| ||| |||| | |||||||||| || || ||||| | | Sbjct 2219 CAGACGGTTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTG 2278 Query 16749 TCCAAAAAGAAGCAACAGCCT 16769 ||||||| || || | |||| Sbjct 2279 TCCAAAATGATGCTTCCGCCT 2299 Score = 102 bits (112), Expect = 8e-17 Identities = 185/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 15898 ATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTG-ACATTTTTTGATATTCAC 15956 |||||| | |||||| || || || |||||||| |||||| | ||||||| Sbjct 1407 ATCTAGTGTAAACACGTTGTCCAAACGGTTCGACATAACACCACATTTCT-GATATTCGG 1465 Query 15957 TAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAA 16016 ||| | ||||| |||||||||||||| || || ||||| || |||||| || | | Sbjct 1466 CCACTTTTTTTTCGAAGAAATTTGTTTTGCCCTCCAATGATATGAATTCCATGAAGTTGA 1525 Query 16017 AAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCA 16076 | |||||||| | || ||| || ||||||||| | ||| | ||| |||| Sbjct 1526 ATGGATTTTTGGTCTTGTAAATTTTTTCAATTCCCAATTCACCGAGTAAGCGATCAGCCA 1585 Query 16077 CAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTG 16136 |||| || ||||| || ||| || ||||| ||||| || | | || || || | | Sbjct 1586 CAAACTCAATATATTGAGACATCAATTCACAATTCATACCAAGCATGTTTACTGGCAAGG 1645 Query 16137 CTTCTGTTAAAAAAtttttttCTATATT 16164 | ||||||||||| | || ||| || || Sbjct 1646 CATCTGTTAAAAACTCTTGTTCAATTTT 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461431664470400