Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq16074 91.5 2e-13 >seq16074 Length=5602 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/193 (71%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 172358 TTGCCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATC 172417 || ||||||||| |||| ||| ||| | || | ||| ||||| | |||||||||||| Sbjct 4362 TTCCCATGGTAATTTACCGCCAAGCCAGTGAATTAAATTGTAGCCCAAAATTTCTAAATC 4421 Query 172418 TCCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATT 172477 ||||| ||| | ||| || | |||| ||| | ||||||| | |||||||| Sbjct 4422 TCCTCGCATTGTTGGAACGCCATTATGGGCATCACGAGAAGTATATTCGATGGTACCATT 4481 Query 172478 ATGTGCTTTTTTAGGATCTGGTTGATAA----ATGTTACTATAACGAGAACATAATCCAA 172533 ||| |||||||||||| |||| | || ||| | | ||| | | ||| |||| Sbjct 4482 ATGCATTTTTTTAGGATCCGGTTTAAAATCTGATG-TCGTGTAATGGCTAGCTAACCCAA 4540 Query 172534 AATCAACTAAATA 172546 ||||||||||||| Sbjct 4541 AATCAACTAAATA 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 678226489524480