Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq77412 87.8 1e-12 seq47011 87.8 1e-12 >seq77412 Length=2780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || |||||||||||||| || || || || | || || ||| | Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| || | |||||| | |||||||| | || || || Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||||||||| | ||| || |||||| |||||||| || | ||| |||||||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTAT--CCGATTACA 166 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGT 25040 ||| || ||||| | || |||||||| || Sbjct 165 ACATTCAAAAAGAATCTACACTTCATTTGGT 135 >seq47011 Length=3271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 24815 TTACAAAAGTTAA--CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAAC 24872 ||||| | |||| ||||||||| || ||||| ||||| | || || || || ||||| Sbjct 1706 TTACAGATATTAAATCATCATGCAAATCTTTGTAAAAACACTTACGGGAAAGACCATAAC 1647 Query 24873 CGTCGATGTCGAATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGA 24932 | | || || || | ||| | | | |||| ||| |||| ||||| | ||||| Sbjct 1646 CCTTGAGGTTGAGCCATCCGATACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGA 1587 Query 24933 AGGCGTACCGGTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCAT 24992 ||| | || || || ||||||||||| | || || |||||| |||||||| Sbjct 1586 AGGGATTCCACCAGATCAACAACGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGGCG 1527 Query 24993 GACTATGAACGATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCG 25052 || || ||||||| || || || || |||| |||||||||||| | || | || Sbjct 1526 TACCTTGTCGGATTACAATATCCAAAAGGAATCCACACTTCATTTAGTGCTCCGTCTTCG 1467 Query 25053 CGGAGGT 25059 || ||| Sbjct 1466 TGGCGGT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417351352378880