Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq146712 441 6e-119 seq115302 203 3e-47 seq77412 116 3e-21 seq53184 116 3e-21 >seq146712 Length=6971 Score = 441 bits (488), Expect = 6e-119 Identities = 1145/1747 (66%), Gaps = 52/1747 (3%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||| || || ||||| ||||| |||||||| || || || ||||| ||||||||||| || Sbjct 2380 CTTATCAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCC 2439 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 || || | ||||||||||| | |||||||| || || || | ||||| ||| | || Sbjct 2440 AGTTTTTAATCCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGG 2499 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | | || | ||| ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 2500 TTCGGCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGGC 2559 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| || || | || | |||| ||||||||| || || || || | || || Sbjct 2560 CATCTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTTC 2619 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTT----------------ATTGTGTA 22388 | ||| || ||| || | || | || || || ||| || | Sbjct 2620 TTGCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAATATTTTGAA 2679 Query 22389 TGAT-----------CAA-------ATTTTTAATCGTATCGTTCCACAAACCGATGGCGG 22430 | | ||| |||||| || ||| | ||||| | | | ||| Sbjct 2680 TTAAACCATTTACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGATCTAATTCGG 2739 Query 22431 TCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTT 22490 | || || || | || ||| |||| || |||||||| || || || | || || | | Sbjct 2740 TTAAGTCCTTTATCAAATGGTGGTTTACTACTTGAAATTCACCAGAAAGTACACGTC--T 2797 Query 22491 GGTAAAT--GTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGT 22548 ||| || ||| || || | ||||||||||||||||| ||||||| || || ||||| Sbjct 2798 CGTATATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTGCGGT 2857 Query 22549 CGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTT 22608 ||||| |||||||| || || || || || || ||||| | || ||||| | ||||| Sbjct 2858 AGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGATTTT 2917 Query 22609 ACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTA 22668 ||| | | | ||| ||||| | ||| | || || || | ||||||||| || Sbjct 2918 TGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGT---TTTATTCCACATATCATA 2974 Query 22669 TTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGC 22728 ||||| | ||| ||| | || || ||||| || |||||||| | || || | | Sbjct 2975 CTGCAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGTAGGTGCCTAATTTTTC 3034 Query 22729 GGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 || |||||||| || || || || || ||||| ||||| |||||||| |||| || ||| Sbjct 3035 AGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGGTT 3094 Query 22789 CAATTCGGCGGCGGCGACGCTTTCGTACGGCAT-ACGCATCATCACGAACGCGTCCGCCA 22847 ||| || | | ||||| || |||| |||||| | | ||| || || |||| Sbjct 3095 TAATAATTGTGCCTCTTCACTTTCATA-TGCATAACGCATTAATATGAATGCATCAGCCA 3153 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCA 22907 |||| || || || || || || ||||| | | ||| ||| || |||||| || || | Sbjct 3154 TACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGGGA 3213 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 ||||| |||| ||| ||| || | || || ||| | ||||||||||| || | Sbjct 3214 TTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAACTT 3273 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA---ACAAACTTGTTGACGGCGA 23024 | ||| ||||| | ||| |||||| | |||| ||||| Sbjct 3274 CTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGGCGA 3333 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 | || || | ||| || ||||| || || ||||| |||| | |||||||||||||||| Sbjct 3334 TTGACGCTAAATTACAAACGGCTACTTCATCTTTTGACGAAAATTCTACAATTTCGGTAC 3393 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | | |||| ||| || || || || | ||| || ||| ||||||||| || | || Sbjct 3394 ACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAGCAT 3453 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | || || ||||| ||||| || || || || || || || || || ||| | Sbjct 3454 CTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATACCATA 3513 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 || || || | || || | | | |||||| || || || | || | Sbjct 3514 GAGATTGGGCTTTCACTTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATATAGTT 3573 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 |||||||| | || |||| ||| || || || ||| |||||||| | | Sbjct 3574 TTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGACACATTAAAG 3633 Query 23325 TCCACATTGAGTCATT---TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 ||| || ||||| ||||||||| ||||||| | || ||||||||||| || | Sbjct 3634 ACCA-AT--CTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGTGCAT 3690 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 | |||| || ||||| | || |||||||| || || || || || ||||| | ||| | Sbjct 3691 AAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAAATT 3750 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | || ||||||| || || || |||| |||||| ||||| || | || || | Sbjct 3751 CAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTGTTAC 3810 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | || ||||| ||||| || || || || ||||||||||||| || || || || || | Sbjct 3811 CACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAAGCCCAT 3870 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || || | ||||| | | || || |||||||||| ||||| | | Sbjct 3871 TAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATACAATGAACATTAA 3930 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||||| ||||| | ||||| || || | || |||||||||| || || || || | Sbjct 3931 GGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCATAAATAC 3990 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 | ||||| || || || | | | ||| || || || || | || | | || | Sbjct 3991 CATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAACTGTGGTCGAGGTG 4050 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | | |||| |||| || || ||| || || || |||| | ||| | || ||||| Sbjct 4051 TTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTCCGATAATAAATTGT 4110 Query 23802 ACGTGTC 23808 |||| || Sbjct 4111 ACGTTTC 4117 >seq115302 Length=2783 Score = 203 bits (224), Expect = 3e-47 Identities = 378/549 (69%), Gaps = 12/549 (2%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| |||||||| |||||||| | |||||||| ||||| || || || || |||| Sbjct 2299 AGGCGGAAGCATCATTTTGGACAGCTGAAGAAGTTGACCTATCAAAAGACATGGCTGATT 2240 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||||| | || ||| ||||| | | |||||| ||||| | || |||||||| | Sbjct 2239 GGGATGCACTAAAACCGTCTGAACGTCACTTTATTTCGCACGTACTTGCATTTTTCGCAG 2180 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGT 57766 |||| ||||||||||| ||||| ||||| || ||| | ||||| |||||||| ||| | Sbjct 2179 CATCTGATGGTATTGTAAACGAAAATTTAGTTGAACG--TTTCAGCCAAGAAGTTCAAAT 2122 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 || || || | || || ||||| |||||| | ||||| ||||| || ||||| || || Sbjct 2121 AACCGAAGCACGTTGTTTCTACGGGTTTCAAATTGCCATGGAAAATGTTCATTCCGAGAT 2062 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC----TGT 57882 ||| || || || |||||||| | || | | | || | ||| ||| | | Sbjct 2061 GTACAGTCTTCTAATTGATACGTA--TATCCGAGATCCAAAAG-AGCGT-GACTTTTTAT 2006 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 |||| || | ||||| | || | ||||| || || ||| | | |||||| Sbjct 2005 TCAATGCCGTTGAAACTTTACCATGTGTAAAAAAGAAAGCTGACTGGGCCCTACAATGGA 1946 Query 57943 TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTA 58002 | |||| |||| | || | || | | || || ||||| || || ||||| | Sbjct 1945 TTTCAAGCAAATCGGCGAATTTTGGTGAACGTATTATTGCATTCGCAGCGGTGGAAGGAA 1886 Query 58003 TATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCG 58062 | |||||| || || || || | ||||||||| |||| ||||| ||||| ||||| | Sbjct 1885 TTTTCTTTAGTGGGAGTTTCGCATCCATATTTTGGTTGAAAAAACGTGGCCTCATGCCAG 1826 Query 58063 GCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGT 58122 | |||| ||| ||||| | ||||| | ||||| || | || ||||||||||| Sbjct 1825 GTTTGACATTTTCGAACGAACTAATATCAAGAGACGAAGGATTACACTGTGATTTTGCGT 1766 Query 58123 GCCTAATGT 58131 | || |||| Sbjct 1765 GTCTCATGT 1757 >seq77412 Length=2780 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || | || || || || ||||| | || || ||||| || Sbjct 343 ATGCAAATTTTCGTAAAAACCTTAACCGGTAAGACAATCACTCTTGAAGTAGAACCATCA 284 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 283 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 224 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || || || ||||| |||||||| | || | |||||| ||| Sbjct 223 CAACGTTTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACATTATCCGATTACAAC 164 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || |||||| |||| ||| | || | || |||| Sbjct 163 ATTCAAAAAGAATCTACACTTCATTTGGTTCTTCGTCTTCGTGGTGGTA 115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || || || || ||||| || ||||||||||| || || ||| Sbjct 478 GACAAGGAAGGAATTCCACCAGATCAACAACGTCTTATTTTCGCTGGCAAGCAATTAGAA 419 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | || | |||||| ||||||||||| ||||| || |||||| |||||||| Sbjct 418 GATGGTCGTACATTATCCGATTACAACATTCAAAAGGAATCCACACTTCATTTGGTACTT 359 Query 31406 AGACTGAGGGGCGGTA 31421 | || | || |||| Sbjct 358 CGTCTTCGTGGTGGTA 343 >seq53184 Length=5087 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||||||| | || || ||||| ||||| | || |||||||||||| Sbjct 4878 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCC 4819 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | ||| || || ||||| | || || || || Sbjct 4818 GATACCATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 4759 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| ||||| || ||||| | || || ||||| ||| Sbjct 4758 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTACAAC 4699 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| || ||||| |||||||| | || | || |||| Sbjct 4698 ATCCAAAAGGAATCCACACTTCACTTGGTACTTCGTCTACGTGGTGGTA 4650 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| | || || ||||| ||||| | || ||||||||||| Sbjct 4650 ATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACAATCACATTAGAGGTTGAACCGTCT 4591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| | ||| || || ||||| | || || ||||| Sbjct 4590 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAA 4531 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| ||||| ||||||||| | ||||| || | || || || Sbjct 4530 CAACGTTTAATTTTCGCCGGCAAACAGCTAGAAGATGGGCGAACGCTTTCTGACTACAAT 4471 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||| || || |||||| | ||| Sbjct 4470 ATTCAAAAAGAGTCTACACTTCATTTAGTA 4441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444725178842880