Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq146712 603 9e-168 seq115302 289 3e-73 seq7872 91.5 1e-13 >seq146712 Length=6971 Score = 603 bits (668), Expect = 9e-168 Identities = 1189/1748 (68%), Gaps = 71/1748 (4%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| ||||| |||| || | || || | | |||||||||||||||| Sbjct 2384 TCAACGGTAAATTGTATAGCGTTTGCAGCTGGCTTCGTGCGTAGATAATACATTCCAGTT 2443 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| |||| || |||||||| ||| || || ||| |||| | || | Sbjct 2444 TTTAATCCCATCTTCCAACCATAAAAATGAATAGAAGTTAGCTTTCCGTAATTTGGTTCG 2503 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | ||| | | ||||| |||||||||||||| ||||| | || || ||||| Sbjct 2504 GCTACGTGTATATTAAACGATTGGCTTTGATCTATAAAAGCACCACGATCCGCGGCCAT- 2562 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATA--------------- 37012 || || || |||| | || | ||||| || |||||||| | Sbjct 2563 -CTTAATTAGCGTTTTAACTGACACTTCCCATACTGTTTTATAAAGACCACGAATTTCTT 2621 Query 37013 ------TTTGTTTTATATT------------ATCTG--GTAA--ATCTAAATGTTGAATA 37050 ||| || ||||| || || | || || | || |||||| Sbjct 2622 GCGGGATTTCTTCAATATTTTGAATTGAACCATTTGCCGCAATANTCAATATTTTGAATT 2681 Query 37051 GAACCATTATGTAACACAATTGT---ATTCTTTATGTCATTATTCCACATATTTCTACTT 37107 ||||||| || | |||| ||| |||||||||| || ||||| || ||| || Sbjct 2682 AAACCATT---TACCGCAATAACGCGATTTTTTATGTCATCATCCCACAGAT--CTAATT 2736 Query 37108 A---TTAGTTCTCT--CAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTC 37162 | ||| || | ||| |||| ||||| || ||||| || ||||| | ||| | Sbjct 2737 CGGTTAAGTCCTTTATCAAATGGTGG---TTTACTACTTGAAATTCACCAGAAAGTACAC 2793 Query 37163 TTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAG 37222 ||| ||||||| || ||||| ||||| | || |||||||| | || ||||| | Sbjct 2794 GTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGATTCATTATTTCCCAAAATTTGTG 2853 Query 37223 ATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAA 37282 ||||| ||||| |||||||| |||| ||||| |||||| | |||||| | | Sbjct 2854 CGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGAATTTCTAACTCCATGCTTCGCGA 2913 Query 37283 TTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCAT 37342 || | || | | |||||||||||||||||||||| | || ||||||||||| Sbjct 2914 TTTTTGCCTTCAACGCGGTCCAATCCCATAAATCTGTTGGAGTTTTATTCCACATATCAT 2973 Query 37343 ATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTT 37402 | || | || |||||||| ||||| | | |||||| || | |||| | ||| ||| Sbjct 2974 ACTGCAAGATGCCTTTACTTACTGGACTTCCTTCATATGTTTCGT-AGGTGCCTAATTTT 3032 Query 37403 T-AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATA 37461 | ||||||||||||||||| ||||| ||| | || |||||||| ||||||||||| Sbjct 3033 TCAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAGTATATTGTCTCGAAAATTTGCTGG 3092 Query 37462 TTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCC 37521 ||||||| || ||| ||||| || || ||||||| | || |||||| || |||||||| Sbjct 3093 TTTAATAATTGTGCCTCTTCACTTTCATATGCATAACGCATTAATATGAATGCATCAGCC 3152 Query 37522 AAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATC 37581 | ||| || ||||| || || || |||| |||| || |||| || | | ||| Sbjct 3153 ATACCTTGTACACCAATCCCAATTGGTCGATGTCTCATATTGGAACGTTTTGCTTCAGGG 3212 Query 37582 ACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATT 37641 | |||||| ||||| | ||| ||||||||||||| |||||| | ||||| |||| | Sbjct 3213 ATTGGATAGTAATTAACATCAATTATTTTATTTAAATTTTTTGTCACAATTTTAGTAACT 3272 Query 37642 ATTCTCAACTTG------TCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAA 37695 | |||||||| ||| | | | | ||| ||| ||||| || | | | Sbjct 3273 TCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTAACATTTACAAACATATTGAGGGCG 3332 Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGT 37754 || || ||| |||||| || || |||||||||| | || ||||| || ||| || || Sbjct 3333 ATTGACGCTAAATTACAAACGGCTACTTCATCTT-TTGACGAAAATTCTACAATTTCGGT 3391 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 ||| | ||| || |||| || || | ||| ||||||||||||| |||||||| Sbjct 3392 ACACAAATTGGAACATTTAATGGTACCGATATTTTGTTGATTGGATTTTCGATTACAAGC 3451 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||||||||| || |||||||| ||| ||| | |||| || ||||||| | ||| Sbjct 3452 ATCTTTATACAGCATATACGGAACTCCAGTTTCAACTTGACTTTCAATAATAGCATACCA 3511 Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTG-TTTCGTATTCTATATATA 37933 || | | ||||| || | || | | ||| | |||| |||| ||||| Sbjct 3512 TAGAGATTGGGCTTTCAC-TTTGCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATATA 3570 Query 37934 ATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTA 37993 ||| | ||| |||| ||||| |||| | || ||||||||| |||||||||| Sbjct 3571 GTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACCAGGACATTCGTGAGGACACATTA 3630 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 |||||| ||||||| | ||| ||||| | ||||||||| || |||| ||||| |||| Sbjct 3631 AAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAATAAGTCGGGTATCCATAGTGCAT 3690 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 ||| | |||| || ||| ||| || || ||| ||| || |||| ||||| | Sbjct 3691 AAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAAATT 3750 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | || |||||| | ||||| ||||||| |||||| | | ||| || || | ||| | || Sbjct 3751 CAAAAATATCACCATGCCAAGGTTCTAGATAAATGGCAAATGCGCCGGGACGTTTGTTAC 3810 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || |||| || || | | | || ||||| || | |||||||| |||||| | |||| Sbjct 3811 CACCTTGATCAACGTACCGAGCAGTATTATTGTACACTCTTAACAAAGGTACAAGCCCAT 3870 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 |||| | || ||| |||| | ||||| | ||||| ||||| ||| | | | | | Sbjct 3871 TAGAAATACCATTTGTACCCGCAATATATGATCCCTTTGCTCGAATA-CAATGAACATTA 3929 Query 38294 A-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | ||||| || |||||| |||||| ||||| || |||||||| || |||||| | ||| Sbjct 3930 AGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACATTGTTTCAATGTATCATAAATA 3989 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || || ||||| || ||| |||| || | ||| || || | || || || Sbjct 3990 CCATCGATACTATCTTCCGACATTGTTAACAAAAAGCATGACGATAACTGTGGTCGAGGT 4049 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 ||||| || ||| | || || || ||||| |||| || ||||||| || |||| Sbjct 4050 GTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGAAATATCTTTCCGATAATAAATTG 4109 Query 38473 TATGTTTC 38480 || ||||| Sbjct 4110 TACGTTTC 4117 >seq115302 Length=2783 Score = 289 bits (320), Expect = 3e-73 Identities = 393/543 (72%), Gaps = 9/543 (2%) Strand=Plus/Plus Query 11611 TAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAG 11670 ||||||||||||||| | ||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 11671 TTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGC 11730 ||| || |||||||| || || ||||| | || |||||||| | ||||||||| | || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 11731 AAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC--- 11787 || ||| |||||| ||||| ||||| ||||| ||||| | | | ||| || Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 11788 ATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTC 11847 || || ||||| || ||||||| | |||||| ||||||||||||||||| ||| Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 11848 CATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATT--ATCTCTTACATATGTA 11905 | ||||| | || || |||||| | | || | || ||||| | ||| ||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAA--AAGTCACGCTCTTTTGGATCTCGGATATACGTA 2043 Query 11906 TCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAG 11965 || |||| | ||| ||||| || ||||||| ||||||||| || |||||||| || ||| Sbjct 2044 TCAATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAG 2103 Query 11966 AAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTT 12025 ||||| ||||| || | || || || || | ||| ||||||| || ||| Sbjct 2104 AAACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTT 2163 Query 12026 ACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT-ATTTTTCGTC 12084 |||||||||||| | ||| |||||||| |||| || ||||||| | || | | Sbjct 2164 ACAATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGAC 2223 Query 12085 TTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCA 12144 | ||| | |||||||||| | | |||||||||| || ||||||||| | ||||| Sbjct 2224 GGT-TTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCA 2282 Query 12145 AAA 12147 ||| Sbjct 2283 AAA 2285 >seq7872 Length=1664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 38201 TATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATAT 38260 |||| || | ||||||||||||||| | |||||||| | | ||| |||| | |||| Sbjct 793 TATTGTACAATCTTAACATAGGTACAAGCCCATTAGAAATATCATTTGTACCCAAAATAT 852 Query 38261 AAGTACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGAT 38319 | | || || ||||| ||| | | | | ||| ||||| || |||||| |||||| Sbjct 853 ATGATCCATTTGCTCGAATA-CAATAAACATCAAGACCTATACCTCCTGCAGATTTTGAA 911 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACT 38363 ||| | || |||||||| || |||||| | ||||| || ||||| Sbjct 912 ATTGATGCACATTGTTTCAATGTATCATAAATACCATCGATACT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467430419772160