Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq146520 111 1e-19 >seq146520 Length=2054 Score = 111 bits (122), Expect = 1e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 ||||| || | || |||| || || | ||| || || | | || ||||| || || Sbjct 683 TAAACATGTACATCGCCCATTGTATGAATAAAATCGCCTGTTTTAAGTCCCGTCACATGC 624 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || |||| || |||||| || ||||| ||||| ||||| || || || |||||||| Sbjct 623 GCAATCATATGCGTCAGCAGACAATAGCTAGCGATATTAAATGGCACACCAAGGCCCATA 564 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACAC 21125 |||||||| | || |||| | || || || || || | |||||||||||| | Sbjct 563 TCGGCGGAACGTTGATACAACATACACGATAGTTCACCATTTGACACGTAAAACTGTGAT 504 Query 21126 AAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATA 21185 | ||| ||||| || || || ||||| | | || ||| | ||| ||||| || |||| Sbjct 503 AGAACATGACATGGTGGTAGGGCCATAAGTGGGATGTCGGTGGGATTCCATGCCGACATT 444 Query 21186 ACGATGCGCCGATC 21199 | ||| || ||||| Sbjct 443 ATGATACGACGATC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426801780798720