Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq146712 459 4e-124 seq115302 313 4e-80 >seq146712 Length=6971 Score = 459 bits (508), Expect = 4e-124 Identities = 1129/1711 (66%), Gaps = 51/1711 (3%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || || ||||| |||||||| |||||||| ||||||| || | |||| || || ||| Sbjct 2411 GCTGGCTTCGTGCGTAGATAATACATTCCAGTTTTTAATCCCATCTTCCAACCATAAAAA 2470 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || ||| ||||| || ||| | || || |||| || ||||| | ||||| ||| Sbjct 2471 TGAATAGAAGTTAGCTTTCCGTAATTTGGTTCGGCTACGTGTATATTAAACGATTGGCTT 2530 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || || || || | || || ||||| || || | ||| || || | |||| Sbjct 2531 TGATCTATAAAAGCACCACGATCCGCGGCCATCTTAATTAGCGTTTTAACTGACACTTCC 2590 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 78975 || | |||||||||| | ||| |||| || | | | |||| ||||| || Sbjct 2591 CATACTGTTTTATAAAGACCACGAATTTCTTGCGGGATTTCTTCAATATTTTGAATTGAA 2650 Query 78976 CCA-------------------------------CCATCTGCC---ATAATCCTATTCTT 79001 ||| |||| | || |||| | ||| || Sbjct 2651 CCATTTGCCGCAATANTCAATATTTTGAATTAAACCATTTACCGCAATAACGCGATTTTT 2710 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || || |||| ||| | | | |||||||| | | | | ||| | || ||||| Sbjct 2711 TATGTCATCATCCCACAGATCTAATTCGGTTAAGTCCTTTATCAAATGGTGGTTTACTAC 2770 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 ||||||||| ||||| | ||| | | || || | || ||||| ||||| | || Sbjct 2771 TTGAAATTCACCAGAAAGTACACGTCTCGTATATACGTTTGACGTATAGGGTTCGAAAGA 2830 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 ||||||||||||||||||||| || || || || || ||||| || || | | | | Sbjct 2831 TTCATTATTTCCCAAAATTTGTGCGGTAGAAGCAGTCGGCATTGGAGCTAAGAGAAGAGA 2890 Query 79182 ATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 |||||||| || ||| | | ||||| | || | | ||||||||| | ||| Sbjct 2891 ATTTCTAACTCC--ATGCTTCGCGATTTTTGCCTTCAACGCGGTCCAATCCCATAAATCT 2948 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 | || |||||| | |||||| || | || || ||||| | |||| Sbjct 2949 GTTGGAGTTTTATTCCACATATCATACTGCAAGATGCCTTTACTTACTGGACTTCCTTCA 3008 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||||||| || | ||| ||||| |||| ||| ||||| || |||||||| ||||| Sbjct 3009 TATGTTTCGTAGGTGCCTAATTTTTCAGCTAGTTCGCAACTAGCTTCTAATGCACCGTAG 3068 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || || |||||||| | || || | |||||| ||| || ||| ||| |||| Sbjct 3069 TATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATGCATAA 3128 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || || | ||||| |||||||| || || |||| ||||||| Sbjct 3129 CGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCTC 3188 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 |||| ||| || ||||| || || ||||| ||||||| ||| || |||||||| | | Sbjct 3189 ATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAAA 3248 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC--TA 79597 || | | | ||| || || || | ||| |||||| || | || || Sbjct 3249 TTTTTTGTCACAATTTTAGTAACTTCTTTCAACTTGTTAAAATCGTATTTTTTTTCATTA 3308 Query 79598 ----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 |||||||||| || | |||| || || | ||||||||||||||| |||| Sbjct 3309 ACATTTACAAACATATTGAGGGCGATTGACGCTAAATTACAAACGGCTACTTCATCTTTT 3368 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 || | ||| || ||||| || || | || ||| |||||||| || | ||||||| Sbjct 3369 GACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAATGGTACCGATATTTTGT 3428 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 ||||| ||| ||||| ||||| ||||| || || ||||| |||||||||| Sbjct 3429 TGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGGAACTCCAGTTTCAACT 3488 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT-CTCTT 79832 ||| ||| ||||| || | ||| | | | || || | | | | | | | | Sbjct 3489 TGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTT-GCGTAGAAAACGGCC 3547 Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||| ||||| |||| ||||| | ||| || || ||||||||| ||||| | || Sbjct 3548 TTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCAACAATCGTGAAGACC 3607 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 ||||||||||| ||||||||| || ||||| ||| ||| | | || || |||||||| Sbjct 3608 AGGACATTCGTGAGGACACATTAAAGACCAATCTTCATTTGCTTCAACGCGCTTCATAAA 3667 Query 79953 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | || || ||||| || || ||| | ||||| || ||| ||||| || ||||| Sbjct 3668 TAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAACTTCCTCTTTACCTGT 3727 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 ||| || || | ||| || || | | ||||||| |||||| ||||| | || ||||| Sbjct 3728 ATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGGTTCTAGATAAATGGC 3787 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | || || |||||||| || || ||||| | ||| | ||| || ||||| || || Sbjct 3788 AAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGCAGTATTATTGTACAC 3847 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 ||| |||| || | || ||||| || ||||||| || || | ||||| ||| | Sbjct 3848 TCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGCAATATATGATCCCTT 3907 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 || |||||| | || || ||||| || ||||| ||| || |||||||| || Sbjct 3908 TGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGCAGATTTTGAAATTAATGCACA 3967 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAAC 80311 | |||| || |||||||| || || || || ||||| || || |||||| | ||| | Sbjct 3968 TTGTTTCAATGTATCATAAATACCATCGATACTATCTTCCGACATTGTTAA-CAAAAAGC 4026 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | || | || | ||| ||||| || ||| | || || || || || || | Sbjct 4027 ATGACGATAACTGTGGTCGAGGTGTTCCAGCCGCAAACATCGTTGGTGAGGCATGAGTGA 4086 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 | || |||| || | || ||||||||| || Sbjct 4087 AATATCTTTCCGATAATAAATTGTACGTTTC 4117 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 |||||| || | ||||| ||||| | ||| |||||||||||||| | || || || Sbjct 4511 ATGAATACCAATGGCGACTCGCATAAGCATATGCTGAGGTCTTTCGGCAATTTTTCGTTT 4570 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 ||||||||||| || ||| |||||| |||||||| |||||||| ||||| ||| || Sbjct 4571 AATTTTCAACAAATACGATCGTTCCAATGTTTTAAACCCAAAATAATTGTAGCCAAAATC 4630 Query 80547 TCGTTCGTAAATAATAACCGAGTT 80570 || || ||||| ||| | || || Sbjct 4631 ACGATCATAAATTATAGCTGAATT 4654 >seq115302 Length=2783 Score = 313 bits (346), Expect = 4e-80 Identities = 404/554 (73%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 49941 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 50000 ||||||||||||||| | ||| || ||||| ||||| | || |||||||| ||||| Sbjct 1746 TAAATGTTTAAACATGAGACACGCAAAATCACAGTGTAATCCTTCGTCTCTTGATATTAG 1805 Query 50001 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 50060 |||||| ||||| || | || ||||| |||||||| ||||| | |||||||||||| || Sbjct 1806 TTCGTTCGAAAATGTCAAACCTGGCATGAGGCCACGTTTTTTCAACCAAAATATGGATGC 1865 Query 50061 AAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA 50120 || |||| |||||| |||||||| || || || || |||| || | || ||| | Sbjct 1866 GAAACTCCCACTAAAGAAAATTCCTTCCACCGCTGCGAATGCAATAATACGTTCACCAAA 1925 Query 50121 ACTGGC-GCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 | | || | | | | || | |||| | | | ||||| || || |||||||||||||| || Sbjct 1926 ATTCGCCGATTTGCTTGAAATCCATTGTAGGGCCCAGTCAGCTTTCTTTTTTACACATGG 1985 Query 50178 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 50237 | ||||| | |||||| || | | ||| || || |||| | ||| ||||| Sbjct 1986 TAAAGTTTCAACGGCATTGAATAAAAAGTCACGCTCTTTTGGATCTCGGATATACGTATC 2045 Query 50238 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || | |||||| ||||| || ||||||| ||||| ||||| || ||||| |||||||| Sbjct 2046 AATTAGAAGACTGTACATCTCGGAATGAACATTTTCCATGGCAATTTGAAACCCGTAGAA 2105 Query 50298 ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCAC 50357 ||| | || ||||| || || |||||| | || |||||| |||||||||| || || Sbjct 2106 ACAACGTGCTTCGGTTATTTGAACTTCTTGGCTGAAACGTTCAACTAAATTTTCGTTTAC 2165 Query 50358 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGG 50417 || || ||| ||||| ||||| || | ||| || ||||| || ||| || Sbjct 2166 AATACCATCAGATGCTGCGAAAAATGCAAGTACGTGCGAAATAAAGTGACGTTCAGACGG 2225 Query 50418 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 | ||||| || ||||||| || ||||| |||| || |||||||| |||||||||| Sbjct 2226 TTTTAGTGCATCCCAATCAGCCATGTCTTTTGATAGGTCAACTTCTTCAGCTGTCCAAAA 2285 Query 50478 TGATGCCTCTGCCT 50491 |||||| || |||| Sbjct 2286 TGATGCTTCCGCCT 2299 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 |||||||| || ||| || ||||| |||| ||||||||| ||||| ||||| || Sbjct 1438 GACATAACACCACATTTCTGATATTCGGCCACTTTTTTTTCGAAGAAATTTGTTTTGCCC 1497 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 ||||||||||| ||||||||| | || ||||| | || |||||||||| || | Sbjct 1498 TCCAATGATATGAATTCCATGAAGTTGAATGGATTTTTGGTCTTGTAAATTTTTTCAATT 1557 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||||||||| | || | ||| || ||||| || |||||| ||||| ||||||| Sbjct 1558 CCCAATTCACCGAGTAAGCGATCAGCCACAAACTCAATATATTGAGACATCAATTCACAA 1617 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAAT 49886 ||||| || | | || ||||| | || | || | ||| ||||||||||| Sbjct 1618 TTCATACCAAGCATGTTTACTGGCAAGGCATCTGTTAAAAACTCTTGTTCAAT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716591067736960